CV713171

Overview
NameCV713171
Unique NameCV713171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713171 vs. ExPASy Swiss-Prot
Match: YCF68_EUCGG (Uncharacterized protein ycf68 OS=Eucalyptus globulus subsp. globulus GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.802e-37
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = -2
Query:  176 LRRCAWAVRALSHMDSSMCSSAPDPEMWIIQGTLAWRTSPVRTG 307
            +RRCAWAVRALSHMDSSMCSSAPDPEMWIIQGTLAWRTSPVRTG
Sbjct:    1 MRRCAWAVRALSHMDSSMCSSAPDPEMWIIQGTLAWRTSPVRTG 44          

HSP 2 Score: 79.337 bits (194), Expect = 3.802e-37
Identity = 40/58 (68.97%), Postives = 41/58 (70.69%), Query Frame = -1
Query:    3 GFENKLLLRRIDGAIQVRSNVDPTFYSLVXXXXXXXXXXXXXXXDNPYIPYQCMDSYL 176
            GFE K LLRRIDGAIQVRSNVDPTFYSLV               +NPYIPYQCMDSYL
Sbjct:   44 GFETKPLLRRIDGAIQVRSNVDPTFYSLVGSGRSGGDPHGSSLLENPYIPYQCMDSYL 101          
BLAST of CV713171 vs. ExPASy Swiss-Prot
Match: YCF68_PINTH (Uncharacterized protein ycf68 OS=Pinus thunbergii GN=ycf68 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.748e-12
Identity = 40/71 (56.34%), Postives = 43/71 (60.56%), Query Frame = -1
Query:    3 MAYFSC-SNRGFENKLLLRRIDGAIQVRSNVDPTFYSLV---XXXXXXXXXXXXXXXDNPYIPYQCMDSYL 203
            MAY SC    GF  +L+LRRIDGAIQVRSN DPTFYS V                  +NPYIPYQCMD YL
Sbjct:    1 MAYSSCLCEPGFGTELILRRIDGAIQVRSNTDPTFYSFVDLGGPGVPVVIHLGSSLLENPYIPYQCMDGYL 71          
BLAST of CV713171 vs. ExPASy Swiss-Prot
Match: YCF68_PINKO (Uncharacterized protein ycf68 OS=Pinus koraiensis GN=ycf68 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.895e-12
Identity = 40/71 (56.34%), Postives = 43/71 (60.56%), Query Frame = -1
Query:    3 MAYFSCS-NRGFENKLLLRRIDGAIQVRSNVDPTFYSLV---XXXXXXXXXXXXXXXDNPYIPYQCMDSYL 203
            MAY SC    GF  +L+LRRIDGAIQVRSN DPTFYS V                  +NPYIPYQCMD YL
Sbjct:    1 MAYSSCLFEPGFGTELILRRIDGAIQVRSNADPTFYSFVDLGGPGGPVVIHHGSSLLENPYIPYQCMDGYL 71          
BLAST of CV713171 vs. ExPASy Swiss-Prot
Match: YCF68_ORYSJ (Uncharacterized protein ycf68 OS=Oryza sativa subsp. japonica GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.014e-11
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = -1
Query:   90 MAYFSCSNRGFE-NKLLLRRIDGAIQVRSNVDPTFYSLV 203
            MAY SC NR  + NKLLLRRIDGAIQVRS+VD TFYSLV
Sbjct:    1 MAYSSCLNRSLKPNKLLLRRIDGAIQVRSHVDLTFYSLV 39          

HSP 2 Score: 31.5722 bits (70), Expect = 2.014e-11
Identity = 15/17 (88.24%), Postives = 15/17 (88.24%), Query Frame = -2
Query:    2 LFSIIHTSLISVWTAIS 52
            LFS IHTSLISVW AIS
Sbjct:   52 LFSRIHTSLISVWRAIS 68          
BLAST of CV713171 vs. ExPASy Swiss-Prot
Match: YCF68_ORYSI (Uncharacterized protein ycf68 OS=Oryza sativa subsp. indica GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.014e-11
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = -1
Query:   90 MAYFSCSNRGFE-NKLLLRRIDGAIQVRSNVDPTFYSLV 203
            MAY SC NR  + NKLLLRRIDGAIQVRS+VD TFYSLV
Sbjct:    1 MAYSSCLNRSLKPNKLLLRRIDGAIQVRSHVDLTFYSLV 39          

HSP 2 Score: 31.5722 bits (70), Expect = 2.014e-11
Identity = 15/17 (88.24%), Postives = 15/17 (88.24%), Query Frame = -2
Query:    2 LFSIIHTSLISVWTAIS 52
            LFS IHTSLISVW AIS
Sbjct:   52 LFSRIHTSLISVWRAIS 68          
BLAST of CV713171 vs. ExPASy Swiss-Prot
Match: YCF68_ORYSA (Uncharacterized protein ycf68 OS=Oryza sativa GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.014e-11
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = -1
Query:   90 MAYFSCSNRGFE-NKLLLRRIDGAIQVRSNVDPTFYSLV 203
            MAY SC NR  + NKLLLRRIDGAIQVRS+VD TFYSLV
Sbjct:    1 MAYSSCLNRSLKPNKLLLRRIDGAIQVRSHVDLTFYSLV 39          

HSP 2 Score: 31.5722 bits (70), Expect = 2.014e-11
Identity = 15/17 (88.24%), Postives = 15/17 (88.24%), Query Frame = -2
Query:    2 LFSIIHTSLISVWTAIS 52
            LFS IHTSLISVW AIS
Sbjct:   52 LFSRIHTSLISVWRAIS 68          
BLAST of CV713171 vs. ExPASy Swiss-Prot
Match: YCF68_ORYNI (Uncharacterized protein ycf68 OS=Oryza nivara GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.014e-11
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = -1
Query:   90 MAYFSCSNRGFE-NKLLLRRIDGAIQVRSNVDPTFYSLV 203
            MAY SC NR  + NKLLLRRIDGAIQVRS+VD TFYSLV
Sbjct:    1 MAYSSCLNRSLKPNKLLLRRIDGAIQVRSHVDLTFYSLV 39          

HSP 2 Score: 31.5722 bits (70), Expect = 2.014e-11
Identity = 15/17 (88.24%), Postives = 15/17 (88.24%), Query Frame = -2
Query:    2 LFSIIHTSLISVWTAIS 52
            LFS IHTSLISVW AIS
Sbjct:   52 LFSRIHTSLISVWRAIS 68          
The following BLAST results are available for this feature:
BLAST of CV713171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
YCF68_EUCGG3.802e-3797.73Uncharacterized protein ycf68 OS=Eucalyptus globul... [more]
YCF68_PINTH3.748e-1256.34Uncharacterized protein ycf68 OS=Pinus thunbergii ... [more]
YCF68_PINKO4.895e-1256.34Uncharacterized protein ycf68 OS=Pinus koraiensis ... [more]
YCF68_ORYSJ2.014e-1179.49Uncharacterized protein ycf68 OS=Oryza sativa subs... [more]
YCF68_ORYSI2.014e-1179.49Uncharacterized protein ycf68 OS=Oryza sativa subs... [more]
YCF68_ORYSA2.014e-1179.49Uncharacterized protein ycf68 OS=Oryza sativa GN=y... [more]
YCF68_ORYNI2.014e-1179.49Uncharacterized protein ycf68 OS=Oryza nivara GN=y... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0002G21_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713171 ID=CV713171; Name=CV713171; organism=Citrus sinensis; type=EST; length=638bp
GAGAGATAGCTGTCCATACACTGATAAGGGATGTATGGATTATCGAGAAG
AGAGGAGCCGTGGTGGTCCCCCCCGGACCGCCCGGATCCCACGAGTGAAT
AGAAAGTTGGATCTACATTGGATCTCACCTGAATCGCCCCATCTATCCTC
CTGAGGAGGAGTTTGTTTTCAAACCCCCGGTTCGAACAGGAGAAGTACGC
CATGCTAATGTGCCTTGGATGATCCACATCTCAGGGTCAGGCGCTGATGA
GCACATTGAACTATCCATGTGGCTGAGAGCCCTCACAGCCCAGGCACAAC
GACGCAATTATCAGGGGCGCGCTCTACCACTGAGCTAATAGCCCGTCGTG
CGGGCCTCCCGCTGGGGGCCCACTATGCCAAAAGCGAGAGAAACCCCATC
CCTCTCTTTCCTTTTTACGCCCCCAGGTCCCTCCCGTGTGGCGACATGGG
GGCGTAAAAGGGGGATCCTATCAACTTGTTCCGACTTAGGATAATAAGCT
CATGGGCTTGGTCTTACTTCACCGTCGAGAAACGAAAGAAGACTTCCATC
TCCAAGTTTAACTCAGGCGTAGCTCGCTTCTTTTTGGGTGTGAAGCGGTG
TCAAACCAAAATACCCAACAAGCATTAGCTCTCCCTGA
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