CV713169

Overview
NameCV713169
Unique NameCV713169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.466e-56
Identity = 104/118 (88.14%), Postives = 114/118 (96.61%), Query Frame = -3
Query:  384 FMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFRV 737
            FM GKEDKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSH+KPYVR KGRKFE+ARGKR SRGF+V
Sbjct:   70 FMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFKV 187          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.371e-56
Identity = 103/118 (87.29%), Postives = 114/118 (96.61%), Query Frame = -3
Query:  384 FMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFRV 737
            FM GK+DKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR SRGF+V
Sbjct:   70 FMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRKSRGFKV 187          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.209e-52
Identity = 100/118 (84.75%), Postives = 109/118 (92.37%), Query Frame = -3
Query:  384 FMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFRV 737
            +M+GKE KI VVVG VTDDIRVY+VP +KVTAL+FTETARARI+KAGGECLTFDQLALR PL  +TVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVR KGRKFE+ARG+R SRGFRV
Sbjct:   67 YMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 183          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3)

HSP 1 Score: 187.578 bits (475), Expect = 6.088e-47
Identity = 92/119 (77.31%), Postives = 103/119 (86.55%), Query Frame = -3
Query:  384 FMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFRV 737
            +M GK+ KIAV+VGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECLTFDQLAL  P   +NTVLLRGPKN REAVKHFGPAPGVPHSHTKPYVR  G+K E ARG+R SRGF+V
Sbjct:   70 YMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRRRSRGFKV 188          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.075e-43
Identity = 86/119 (72.27%), Postives = 104/119 (87.39%), Query Frame = -3
Query:  387 FMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFR 737
            FMK  G+E+ IAVVVGTVTDD+R+Y+VP L++ ALR TE ARARI KAGGE LTFDQLA++AP G+ TVL++GP+N+REA +HFGPAPGVPHSHTKPYVR KGRKFERARG+R SR ++
Sbjct:   69 FMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFERARGRRKSRRYK 187          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.515e-41
Identity = 83/119 (69.75%), Postives = 97/119 (81.51%), Query Frame = -3
Query:  387 FMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFR 737
            FMK  G+E   AV+VGTVTDD R++E+P L + ALR T+TARA I KAGGE +TFDQLALR+P G  TVLL+G +NAREAVKHFGPAPGVPHSH KP VR KGRKFERARG+R S G++
Sbjct:   69 FMKKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFERARGRRRSCGYK 187          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_ORENI (60S ribosomal protein L18 OS=Oreochromis niloticus GN=rpl18 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.477e-40
Identity = 78/116 (67.24%), Postives = 95/116 (81.90%), Query Frame = -3
Query:  387 MKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFR 734
            + G+E+KIAVVVGTVTDD+R+ ++P LK+ ALR T+ AR RI KAGG+ +TFDQLAL +P GQ TVLL GP+ ARE  +HFG APG PHSHTKPYVR KGRKFERARG+R S G++
Sbjct:   72 LPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASCGYK 187          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_OREMO (60S ribosomal protein L18 OS=Oreochromis mossambicus GN=rpl18 PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.477e-40
Identity = 78/116 (67.24%), Postives = 95/116 (81.90%), Query Frame = -3
Query:  387 MKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFR 734
            + G+E+KIAVVVGTVTDD+R+ ++P LK+ ALR T+ AR RI KAGG+ +TFDQLAL +P GQ TVLL GP+ ARE  +HFG APG PHSHTKPYVR KGRKFERARG+R S G++
Sbjct:   72 LPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASCGYK 187          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_ICTPU (60S ribosomal protein L18 OS=Ictalurus punctatus GN=rpl18 PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 2.477e-40
Identity = 77/116 (66.38%), Postives = 94/116 (81.03%), Query Frame = -3
Query:  387 MKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFR 734
            ++G+E+KIAVVVGT+TDD+R+  +P LKV ALR T  AR RI KAGG+ +TFDQLA+  P GQ TVLL GP+ ARE  +HFG APG PHSHTKPY+R KGRKFERARG+R SRG++
Sbjct:   72 LQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRSKGRKFERARGRRASRGYK 187          
BLAST of CV713169 vs. ExPASy Swiss-Prot
Match: RL18_MOUSE (60S ribosomal protein L18 OS=Mus musculus GN=Rpl18 PE=2 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 3.236e-40
Identity = 79/116 (68.10%), Postives = 94/116 (81.03%), Query Frame = -3
Query:  387 MKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRFKGRKFERARGKRNSRGFR 734
            + G+E+K AVVVGTVTDD+R+ EVP LKV ALR +  AR+RI KAGG+ LTFDQLAL +P G+ TVLL GP+  RE  +HFG APG PHSHTKPYVR KGRKFERARG+R SRG++
Sbjct:   72 LPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 187          
The following BLAST results are available for this feature:
BLAST of CV713169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RL182_ARATH2.466e-5688.1460S ribosomal protein L18-2 OS=Arabidopsis thalian... [more]
RL183_ARATH9.371e-5687.2960S ribosomal protein L18-3 OS=Arabidopsis thalian... [more]
RL18_CICAR8.209e-5284.7560S ribosomal protein L18 (Fragment) OS=Cicer arie... [more]
RL181_ARATH6.088e-4777.31Putative 60S ribosomal protein L18-1 OS=Arabidopsi... [more]
RL18_IXOSC1.075e-4372.2760S ribosomal protein L18 OS=Ixodes scapularis GN=... [more]
RL18_TIMBA8.515e-4169.7560S ribosomal protein L18 OS=Timarcha balearica GN... [more]
RL18_ORENI2.477e-4067.2460S ribosomal protein L18 OS=Oreochromis niloticus... [more]
RL18_OREMO2.477e-4067.2460S ribosomal protein L18 OS=Oreochromis mossambic... [more]
RL18_ICTPU2.477e-4066.3860S ribosomal protein L18 OS=Ictalurus punctatus G... [more]
RL18_MOUSE3.236e-4068.1060S ribosomal protein L18 OS=Mus musculus GN=Rpl18... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0002G20_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002G20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713169 ID=CV713169; Name=CV713169; organism=Citrus sinensis; type=EST; length=739bp
TTTTTTTTTTTTTTTTTGCAGGATTGGACAATCATTTATAAAAGCCATTT
TTACGACAAATGTGGCAGTATTTAGCACAAAGCAACATCCACAACAAAAC
TAAAACCAGTTCTCATGGTTCATTTTAATTCAACTAGGCATGCATGTATG
TGTGTAGAACTTGGGCAACTTTTAAATGAGGCATCCTGTCTTCACTTCTA
AACATCAAGCCCCGAAGGACATCCAAGATCTGTCTCAAACAAAAAAAAAT
CCAAAAATCCAAATATAACTTGCTAAGATATTGTCCCAAGAGATTTAAAA
TAGCAAGGAGAAAAAAAGAAAACACAACATTTGCATAAGGTGGTCGGCTG
CTCTGTATCCTTATGAATGAGTTCTGCATCTCAAACCCTGAAGCCTCTGC
TGTTCCTTTTTCCTCTAGCCCTCTCAAATTTTCTTCCCTTAAATCGCACA
TAGGGTTTGGTGTGGCTGTGTGGTACACCAGGAGCAGGTCCAAAGTGCTT
GACAGCCTCACGAGCATTCTTCGGACCTCTCAGGAGAACCGTGTTCTGAC
CCAAAGGAGCACGAAGAGCCAGTTGGTCAAATGTCAAGCATTCTCCCCCT
GCCTTCTCAATTCTTGCCCTTGCTGTCTCTGTGAACCTCAGTGCAGTAAC
CTTGAGTGCAGGAACTTCATACACACGAATATCATCAGTGACTGTTCCAA
CAACCACAGCAATCTTGTCCTCCTTGCCCTTCATGAATT
back to top