CV713165

Overview
NameCV713165
Unique NameCV713165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV713165 vs. ExPASy Swiss-Prot
Match: YCF68_ORYSJ (Uncharacterized protein ycf68 OS=Oryza sativa subsp. japonica GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11
Identity = 39/59 (66.10%), Postives = 41/59 (69.49%), Query Frame = 3 
Query:   21 KNGAPNNVSSQTKNYEIAPFISFWGDGGIVXXXXXXXXXXXXGGLEKAAINRIFLILPS 197
            +NGAPNN SSQTKNYEI   +SFWGDGGIV            GGLEKAAINR  LILPS
Sbjct:   79 ENGAPNNASSQTKNYEIT--LSFWGDGGIV--PFEPFFHAFPGGLEKAAINRTSLILPS 133
[Close]
BLAST of CV713165 vs. ExPASy Swiss-Prot
Match: YCF68_ORYSI (Uncharacterized protein ycf68 OS=Oryza sativa subsp. indica GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11
Identity = 39/59 (66.10%), Postives = 41/59 (69.49%), Query Frame = 3 
Query:   21 KNGAPNNVSSQTKNYEIAPFISFWGDGGIVXXXXXXXXXXXXGGLEKAAINRIFLILPS 197
            +NGAPNN SSQTKNYEI   +SFWGDGGIV            GGLEKAAINR  LILPS
Sbjct:   79 ENGAPNNASSQTKNYEIT--LSFWGDGGIV--PFEPFFHAFPGGLEKAAINRTSLILPS 133
[Close]
BLAST of CV713165 vs. ExPASy Swiss-Prot
Match: YCF68_ORYSA (Uncharacterized protein ycf68 OS=Oryza sativa GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11
Identity = 39/59 (66.10%), Postives = 41/59 (69.49%), Query Frame = 3 
Query:   21 KNGAPNNVSSQTKNYEIAPFISFWGDGGIVXXXXXXXXXXXXGGLEKAAINRIFLILPS 197
            +NGAPNN SSQTKNYEI   +SFWGDGGIV            GGLEKAAINR  LILPS
Sbjct:   79 ENGAPNNASSQTKNYEIT--LSFWGDGGIV--PFEPFFHAFPGGLEKAAINRTSLILPS 133
[Close]
BLAST of CV713165 vs. ExPASy Swiss-Prot
Match: YCF68_ORYNI (Uncharacterized protein ycf68 OS=Oryza nivara GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11
Identity = 39/59 (66.10%), Postives = 41/59 (69.49%), Query Frame = 3 
Query:   21 KNGAPNNVSSQTKNYEIAPFISFWGDGGIVXXXXXXXXXXXXGGLEKAAINRIFLILPS 197
            +NGAPNN SSQTKNYEI   +SFWGDGGIV            GGLEKAAINR  LILPS
Sbjct:   79 ENGAPNNASSQTKNYEIT--LSFWGDGGIV--PFEPFFHAFPGGLEKAAINRTSLILPS 133
[Close]
BLAST of CV713165 vs. ExPASy Swiss-Prot
Match: YCF68_SACOF (Uncharacterized protein ycf68 OS=Saccharum officinarum GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 5.569e-11
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 1 
Query:   22 KMEHLTTYLHRPRTTRSPLSF 84
            KMEHLTT+LHRPRTTRSPLSF
Sbjct:   80 KMEHLTTHLHRPRTTRSPLSF 100

HSP 2 Score: 41.9726 bits (97), Expect = 5.569e-11
Identity = 23/39 (58.97%), Postives = 24/39 (61.54%), Query Frame = 3 
Query:   81 ISFWGDGGIVXXXXXXXXXXXXGGLEKAAINRIFLILPS 197
            +SFWGDGGIV            GGLEKA INR  LILPS
Sbjct:   98 LSFWGDGGIVPFEPFFHAFP--GGLEKAVINRTSLILPS 134
[Close]
BLAST of CV713165 vs. ExPASy Swiss-Prot
Match: YCF68_SACHY (Uncharacterized protein ycf68 OS=Saccharum hybrid GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 5.569e-11
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 1 
Query:   22 KMEHLTTYLHRPRTTRSPLSF 84
            KMEHLTT+LHRPRTTRSPLSF
Sbjct:   80 KMEHLTTHLHRPRTTRSPLSF 100

HSP 2 Score: 41.9726 bits (97), Expect = 5.569e-11
Identity = 23/39 (58.97%), Postives = 24/39 (61.54%), Query Frame = 3 
Query:   81 ISFWGDGGIVXXXXXXXXXXXXGGLEKAAINRIFLILPS 197
            +SFWGDGGIV            GGLEKA INR  LILPS
Sbjct:   98 LSFWGDGGIVPFEPFFHAFP--GGLEKAVINRTSLILPS 134
[Close]
BLAST of CV713165 vs. ExPASy Swiss-Prot
Match: YCF68_MAIZE (Uncharacterized protein ycf68 OS=Zea mays GN=ycf68 PE=3 SV=2)

HSP 1 Score: 46.2098 bits (108), Expect = 5.569e-11
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 1 
Query:   22 KMEHLTTYLHRPRTTRSPLSF 84
            KMEHLTT+LHRPRTTRSPLSF
Sbjct:   80 KMEHLTTHLHRPRTTRSPLSF 100

HSP 2 Score: 41.9726 bits (97), Expect = 5.569e-11
Identity = 23/39 (58.97%), Postives = 24/39 (61.54%), Query Frame = 3 
Query:   81 ISFWGDGGIVXXXXXXXXXXXXGGLEKAAINRIFLILPS 197
            +SFWGDGGIV            GGLEKA INR  LILPS
Sbjct:   98 LSFWGDGGIVPFEPFFHAFP--GGLEKAVINRTSLILPS 134
The following BLAST results are available for this feature:
BLAST of CV713165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
YCF68_ORYSJ1.907e-1166.10Uncharacterized protein ycf68 OS=Oryza sativa subs... [more]
YCF68_ORYSI1.907e-1166.10Uncharacterized protein ycf68 OS=Oryza sativa subs... [more]
YCF68_ORYSA1.907e-1166.10Uncharacterized protein ycf68 OS=Oryza sativa GN=y... [more]
YCF68_ORYNI1.907e-1166.10Uncharacterized protein ycf68 OS=Oryza nivara GN=y... [more]
YCF68_SACOF5.569e-1195.24Uncharacterized protein ycf68 OS=Saccharum officin... [more]
YCF68_SACHY5.569e-1195.24Uncharacterized protein ycf68 OS=Saccharum hybrid ... [more]
YCF68_MAIZE5.569e-1195.24Uncharacterized protein ycf68 OS=Zea mays GN=ycf68... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0002G18_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002G18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713165 ID=CV713165; Name=CV713165; organism=Citrus sinensis; type=EST; length=751bp
TTCCGGCCTCAATGGGGAAAAAAAATGGAGCACCTAACAACGTATCTTCA
CAGACCAAGAACTACGAGATCGCCCCTTTCATTTCATTCTGGGGTGACGG
AGGGATCGTACCATTCGAGCCTTTTTTTTTTTTTCATGCTTTTCCCGGAG
GTCTGGAGAAAGCTGCAATCAATAGGATTTTCCTAATCCTCCCTTCCCGA
AAGGAAGAACGTGAAATTCTTTTTCCTTTTCCTTTCCGCAGGGACCAGGA
GATTGGATCTAGCCGTAAGAAGAATGCTTGGCTGATAAATAACTCACTTC
TTGGTCTTCGACCCCCTCAGTCACTACGAACGCCCCCGAGCGGTGCAATG
GGATGTGTCTATTTATCTATCTCTTGACTCGAAATGGGAGCAGGTTTGAA
AAAGGATCTTAGAGTGTCTAGGGTTGGGCCGGGAGGGCCTCTTAACGCCT
TCTTTTTTCTTCTCATCGGAGTTATTTCACAAATACGTGCCATGATAAGG
AAGAGGGGGGGAACAAGCACACTTGGAGAGCGCAGTACAACGGAGAGTTG
TATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCCGTTGAT
TCTCTCCCAATTGGTTGGACCGTAGGTGCGATGATTTACTTCACGGGCGA
GGTCTCTGGTTCAAATCCAGGATGGCCCAGCTGCGCCAAGGAAAAGAAAA
AGAATAGAAGAAGCGTCGGACTCCTTCATGCATGCTCCACTTGGCTCGGG
G
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