CV713163

Overview
NameCV713163
Unique NameCV713163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length351
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713163 vs. ExPASy Swiss-Prot
Match: R27A2_ARATH (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.762e-35
Identity = 70/83 (84.34%), Postives = 79/83 (95.18%), Query Frame = -1
Query:  103 LRNKFHCPIVNVDKLWSMVPQEVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 351
            LRNKF CPIVN+DKLWS+VP++VKAK+SKDNVP+IDVTQ G+FKVLGKG LPEN+P VVKAKL+SKTAEKKIKEAGGAVVLTA
Sbjct:   64 LRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146          
BLAST of CV713163 vs. ExPASy Swiss-Prot
Match: R27A3_ARATH (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.284e-34
Identity = 69/83 (83.13%), Postives = 79/83 (95.18%), Query Frame = -1
Query:  103 LRNKFHCPIVNVDKLWSMVPQEVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 351
            LRNKF CPIVN+DKLWS+VP++VKAK++KDNVP+IDVTQ G+FKVLGKG LPEN+P VVKAKL+SKTAEKKIKEAGGAVVLTA
Sbjct:   64 LRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146          
BLAST of CV713163 vs. ExPASy Swiss-Prot
Match: RL27A_TETTH (60S ribosomal protein L27a OS=Tetrahymena thermophila GN=RPL27A PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.542e-22
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = -1
Query:  103 RNKFHCPIVNVDKLWSMVPQEVKAKASKDN--VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 348
            +N  HCP+VN+DKLWS+V    + K ++D   VP+IDVT+ G+FKVLGKG LP NQPVVVKAK  SKTAE++I   GGA VLTA
Sbjct:   67 KNPLHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLP-NQPVVVKAKYFSKTAERRIVAVGGACVLTA 149          
BLAST of CV713163 vs. ExPASy Swiss-Prot
Match: RL27A_OSCBR (60S ribosomal protein L27a OS=Oscheius brevesophaga GN=rpl-27a PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.736e-21
Identity = 47/82 (57.32%), Postives = 61/82 (74.39%), Query Frame = -1
Query:  103 RNKFHCPIVNVDKLWSMVPQEVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 348
            +N  +CP VNVD+LW++VP+E K K S +  P+ID  + GYFKVLGKG+LP+ QP++VKAK  S  AE KIK AGGA +L A
Sbjct:   65 KNHHYCPTVNVDRLWALVPEEQKTKVSAEKAPVIDCVKAGYFKVLGKGLLPK-QPLIVKAKFFSHEAENKIKAAGGACILVA 145          
BLAST of CV713163 vs. ExPASy Swiss-Prot
Match: RL27A_DICDI (60S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.350e-20
Identity = 45/86 (52.33%), Postives = 64/86 (74.42%), Query Frame = -1
Query:  103 LRNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 351
            LRN++HCP V+++K+W++VP+ V+   +  N    P++DVTQ G+FKVLG G+LP  QP++VKA+  SK AEKKIK  GGA +L A
Sbjct:   64 LRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILP-TQPIIVKARYFSKVAEKKIKAVGGACILVA 148          
BLAST of CV713163 vs. ExPASy Swiss-Prot
Match: RL27A_EUPCR (60S ribosomal protein L27a OS=Euplotes crassus GN=RPL27A PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.931e-20
Identity = 48/85 (56.47%), Postives = 65/85 (76.47%), Query Frame = -1
Query:  103 LRNKFHCPIVNVDKLWSMVPQEVKAKASKDN--VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 351
            +RN+++CP +N+ KLWS+V +E + KA  D   V +IDV + GY+KVLGKG+LPE  P+VVKAKL + TAEK+IK+ GGA VL A
Sbjct:   64 MRNQYYCPSINLSKLWSLVTEEERQKAQTDKSKVILIDVVKHGYYKVLGKGLLPE-VPLVVKAKLFTPTAEKRIKQVGGACVLRA 147          
BLAST of CV713163 vs. ExPASy Swiss-Prot
Match: RL27A_PONAB (60S ribosomal protein L27a OS=Pongo abelii GN=RPL27A PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 9.875e-19
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = -1
Query:  103 RNKFHCPIVNVDKLWSMVPQEVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 348
            RN+  CP VN+DKLW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148          
BLAST of CV713163 vs. ExPASy Swiss-Prot
Match: RL27A_HUMAN (60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.875e-19
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = -1
Query:  103 RNKFHCPIVNVDKLWSMVPQEVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 348
            RN+  CP VN+DKLW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148          
BLAST of CV713163 vs. ExPASy Swiss-Prot
Match: RL27A_RAT (60S ribosomal protein L27a OS=Rattus norvegicus GN=Rpl27a PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.684e-18
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = -1
Query:  103 RNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 348
            RN+  CP VN+DKLW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148          
BLAST of CV713163 vs. ExPASy Swiss-Prot
Match: RL27A_MACFA (60S ribosomal protein L27a OS=Macaca fascicularis GN=RPL27A PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.684e-18
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = -1
Query:  103 RNKFHCPIVNVDKLWSMVPQEVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 348
            RN+  CP VN+DKLW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148          
The following BLAST results are available for this feature:
BLAST of CV713163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
R27A2_ARATH5.762e-3584.3460S ribosomal protein L27a-2 OS=Arabidopsis thalia... [more]
R27A3_ARATH1.284e-3483.1360S ribosomal protein L27a-3 OS=Arabidopsis thalia... [more]
RL27A_TETTH9.542e-2261.9060S ribosomal protein L27a OS=Tetrahymena thermoph... [more]
RL27A_OSCBR4.736e-2157.3260S ribosomal protein L27a OS=Oscheius brevesophag... [more]
RL27A_DICDI2.350e-2052.3360S ribosomal protein L27a OS=Dictyostelium discoi... [more]
RL27A_EUPCR8.931e-2056.4760S ribosomal protein L27a OS=Euplotes crassus GN=... [more]
RL27A_PONAB9.875e-1954.1260S ribosomal protein L27a OS=Pongo abelii GN=RPL2... [more]
RL27A_HUMAN9.875e-1954.1260S ribosomal protein L27a OS=Homo sapiens GN=RPL2... [more]
RL27A_RAT1.684e-1854.1260S ribosomal protein L27a OS=Rattus norvegicus GN... [more]
RL27A_MACFA1.684e-1854.1260S ribosomal protein L27a OS=Macaca fascicularis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0002G17_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002G17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713163 ID=CV713163; Name=CV713163; organism=Citrus sinensis; type=EST; length=351bp
ATAACATAAACATCCAAAACTACATGTAAAAATAGTCAAATACTCAAAAA
CTGAAATCCAAAATATCACAAAAAATTTCTAAAAACAATAACAGTAAACC
TAAGCAGTAAGCACAACAGCCCCACCAGCTTCTTTAATTTTCTTCTCGGC
TGTCTTGGAAACAAGCTTGGCCTTCACCACAACGGGTTGGTTCTCAGGCA
AAACGCCCTTACCCAAAACCTTAAAGTAGCCAAACTGAGTCACATCGATC
ATTGGCACATTGTCTTTGGAAGCCTTGGCTTTGACCTCCTGAGGTACCAT
CGACCAAAGCTTGTCGACGTTCACAATTGGGCAATGAAATTTATTACGCA
G
back to top