CV713158

Overview
NameCV713158
Unique NameCV713158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV713158 vs. ExPASy Swiss-Prot
Match: CHFR_DANRE (E3 ubiquitin-protein ligase CHFR OS=Danio rerio GN=chfr PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 58/205 (28.29%), Postives = 82/205 (40.00%), Query Frame = -1 
Query:  119 CNQTTVHLQCQGCGGMMPSRN------DSVPQHCLGCDRAFCGAYWHAQMVARSDSQPMCSHETFKPISERTIS-RIPFLAHEMNRHEQDVTERCIRQMGRSLQDVISDWVEKLNNREIDRTRMPLNHAE--AITARSHICNECYDKLVSFLLYWFRIAMPKHLLPADAKQREDCWYGYACRTQHHNEEHARKRNHVCRPTRGSN 706
            C     HL C  C   MP R          PQHCL C + FC  YW    +          H      SE  ++ +        N++E +V +  +   G S + ++ D ++ L        +  L H     ITA S +C  C  +    L Y +R  +P   LP     R +C++G  CRTQ     HA K NH+C  TR  N
Sbjct:  450 CPPQASHLICTCCLQPMPDRRFEHLPPQVSPQHCLVCQKPFCHVYWGCPRIG--------CHGCLARFSELNLNDKCLDGVFNGNQYESEVLQNYLSCRGMSWRHLLQDSLQAL--------QQGLYHLSDYRITANSFLCYCCGLRTFRELAYKYRERIPPSELPDAVTNRPNCYWGRNCRTQ-VKAHHALKFNHICEQTRFKN 637
The following BLAST results are available for this feature:
BLAST of CV713158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CHFR_DANRE1.565e-1228.29E3 ubiquitin-protein ligase CHFR OS=Danio rerio GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0002G14_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713158 ID=CV713158; Name=CV713158; organism=Citrus sinensis; type=EST; length=706bp
CTAAGTGGATCCCCCNGGGCTGCAGGTTTTTTTTTATAGGAAAGGGGGGG
AAGGCATTTATTAACCGCATACTATTTATTTCAAAAAAAAAAAAATATGT
GAACCGTACGCGTTACATATTAGAGCCCCTGGTTGGACGACAAACATGAT
TTCTTTTACGAGCATGTTCTTCATTGTGGTGCTGTGTTCGACATGCGTAT
CCATACCAGCAATCTTCTCTTTGCTTTGCATCTGCTGGTAGAAGATGTTT
GGGCATTGCAATCCGAAACCAGTACAAGAGAAAGGAGACCAATTTATCAT
AACACTCGTTGCAAATATGACTCCTAGCAGTTATCGCCTCAGCATGATTC
AATGGCATCCTTGTTCGATCAATCTCTCTATTGTTCAGCTTCTCAACCCA
ATCGGATATAACATCCTGCAATGATCTCCCCATTTGTCTAATACACCTCT
CTGTGACATCTTGTTCGTGCCGATTCATTTCGTGCGCAAGAAATGGAATC
CTAGAGATGGTGCGTTCTGAGATAGGTTTGAAAGTTTCATGACTGCACAT
AGGTTGGGAGTCACTTCTAGCAACCATTTGAGCATGCCAATATGCACCAC
AAAATGCTCTATCACATCCCAAACAGTGTTGTGGTACACTGTCATTCCTG
GACGGCATCATTCCTCCGCATCCCTGACATTGTAAATGCACTGTGGTCTG
GTTGCA
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