CV713150

Overview
NameCV713150
Unique NameCV713150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV713150 vs. ExPASy Swiss-Prot
Match: KTNB1_ARATH (Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.951e-26
Identity = 60/80 (75.00%), Postives = 69/80 (86.25%), Query Frame = 3 
Query:    3 SISLDILLKLVRTFGSMIYSAISASTSVGVDIEAEQRIERCNRCFIELEKVKCCLPTLMRRGGSVAKSAQELNLALQDVS 242
            S+SLD+LLKLVR +GS IYS++SA  SVGVDIEAEQRIER +RCF+ELEKVK CLP+L RRGG VAKS  ELNLA Q+VS
Sbjct:  757 SVSLDLLLKLVRLYGSPIYSSLSAPASVGVDIEAEQRIERYSRCFVELEKVKACLPSLARRGGLVAKSVLELNLAFQEVS 836
The following BLAST results are available for this feature:
BLAST of CV713150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KTNB1_ARATH2.951e-2675.00Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0002G10_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713150 ID=CV713150; Name=CV713150; organism=Citrus sinensis; type=EST; length=787bp
TAAGCATCTCCTTGGACATTCTGCTAAAGCTTGTCAGAACATTTGGTTCG
ATGATTTACTCAGCAATATCAGCATCAACTTCTGTTGGTGTTGATATTGA
GGCAGAACAAAGAATCGAACGTTGCAATCGCTGCTTTATAGAGCTGGAAA
AAGTCAAATGCTGCTTGCCTACTCTTATGAGAAGAGGTGGTTCCGTTGCG
AAATCCGCTCAAGAATTGAATTTAGCGCTTCAGGATGTTTCATGAGTGAT
GACTCATACCAAGTAGAAACGAGTTTTTTTGCCATTGCATGGATTGAAGT
CATACGTTGCTTTGATAGAAAGTGTGCAAGTACTGAACTGTCTGCATACA
AGAGCCAGTAGCTTAATGTCTTTGTATGGCCTTGGTCCTCCATGTACATG
GTAATAGAGGCATTAACAATTACTTGATTCTATAAGTTAACTGGAACCAA
AGGCTAATAGAAGCTGCTGCTGGTTGCTGTACAGTTTTGGCAACTGTCAA
CTCGGTACATGCTTGGCAAAGAAGAATTTACCCACTTCATTGCATTCTAA
CCCCATGTGCAGCTCATCACGTGTAACTTTTGGTGTGTATTGAGCTAATT
ATTGTTTTTATCATACATATACAAATTTGTTTGAGTCCTGAAATAGAGCA
AAGCTGAGCTCTTCTGAGCTTAATGATGTTCAGAGACTATGTAGTAGTAT
GTAATCAGTAATCACACTATGGCTGGGTAGTGACTGACAGAAAAAGCTAA
TGCTATAACACAATGTATGCTATGCCGGTTTGGGGCA
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