CV713099

Overview
NameCV713099
Unique NameCV713099
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_CITSI (50S ribosomal protein L16, chloroplastic OS=Citrus sinensis GN=rpl16 PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.862e-65
Identity = 121/133 (90.98%), Postives = 121/133 (90.98%), Query Frame = 2
Query:   53 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIISG 451
            NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAEN            MPIRTQFIISG
Sbjct:    4 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIRTQFIISG 136          
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_VIGUN (50S ribosomal protein L16, chloroplastic (Fragment) OS=Vigna unguiculata GN=rpl16 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.498e-63
Identity = 116/137 (84.67%), Postives = 122/137 (89.05%), Query Frame = 2
Query:   41 TINYNPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIISG 451
            TINYNP+RTRFRKQHRGRMKGISYRGN+ICFGRYALQALEPAWITSRQIEAGRRAM+RNVRRGG+IWVRIFPDKPVT+RPTETRMGSGKG PEYWVAVVKPG+ILYEM GV EN            MPIRTQFIISG
Sbjct:    1 TINYNPQRTRFRKQHRGRMKGISYRGNNICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGFPEYWVAVVKPGKILYEMGGVPENIARKAISIASSKMPIRTQFIISG 137          
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_GOSBA (50S ribosomal protein L16, chloroplastic OS=Gossypium barbadense GN=rpl16 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.569e-63
Identity = 117/133 (87.97%), Postives = 120/133 (90.23%), Query Frame = 2
Query:   53 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIISG 451
            +PKRTRFRKQHRGRMKGISYRGN ICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAEN            MPI+TQFIISG
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIVASKMPIKTQFIISG 135          
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_VITVI (50S ribosomal protein L16, chloroplastic OS=Vitis vinifera GN=rpl16 PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.967e-63
Identity = 117/133 (87.97%), Postives = 119/133 (89.47%), Query Frame = 2
Query:   53 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIISG 451
            +PKRTRFRKQHRGRMKGISYRGN ICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAEN            MPIRTQFIISG
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQFIISG 135          
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_MORIN (50S ribosomal protein L16, chloroplastic OS=Morus indica GN=rpl16 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.329e-62
Identity = 115/133 (86.47%), Postives = 118/133 (88.72%), Query Frame = 2
Query:   53 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIISG 451
            +PKRTRFRK HRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKP+T+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGV EN            MPIRTQFIISG
Sbjct:    3 SPKRTRFRKHHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPITVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVPENIARKAIAIAASKMPIRTQFIISG 135          
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_EUCGG (50S ribosomal protein L16, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.329e-62
Identity = 116/133 (87.22%), Postives = 119/133 (89.47%), Query Frame = 2
Query:   53 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIISG 451
            +PKRTRFRKQHRGRMKGISYRGN ICFG+YALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAEN            MPIRTQFIISG
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNRICFGKYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENIARKAISIAASKMPIRTQFIISG 135          
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_HELAN (50S ribosomal protein L16, chloroplastic OS=Helianthus annuus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.736e-62
Identity = 115/136 (84.56%), Postives = 118/136 (86.76%), Query Frame = 2
Query:   44 INYNPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIISG 451
            +NYNPKRTRFRKQHRGRMKGISYRGN ICFG+YALQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN            MPIR QFIISG
Sbjct:    1 MNYNPKRTRFRKQHRGRMKGISYRGNTICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISIAASKMPIRAQFIISG 136          
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_GUIAB (50S ribosomal protein L16, chloroplastic OS=Guizotia abyssinica GN=rpl16 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.736e-62
Identity = 115/136 (84.56%), Postives = 118/136 (86.76%), Query Frame = 2
Query:   44 INYNPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIISG 451
            +NYNPKRTRFRKQHRGRMKGISYRGN ICFG+YALQALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPGRILYEM GV EN            MPIR QFIISG
Sbjct:    1 MNYNPKRTRFRKQHRGRMKGISYRGNTICFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTENIARRAISIAASKMPIRAQFIISG 136          
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_GOSHI (50S ribosomal protein L16, chloroplastic OS=Gossypium hirsutum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.736e-62
Identity = 116/133 (87.22%), Postives = 119/133 (89.47%), Query Frame = 2
Query:   53 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIISG 451
            +PKR RFRKQHRGRMKGISYRGN ICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAEN            MPI+TQFIISG
Sbjct:    3 SPKRNRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARKAISIAASKMPIKTQFIISG 135          
BLAST of CV713099 vs. ExPASy Swiss-Prot
Match: RK16_CARPA (50S ribosomal protein L16, chloroplastic OS=Carica papaya GN=rpl16 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.736e-62
Identity = 115/133 (86.47%), Postives = 119/133 (89.47%), Query Frame = 2
Query:   53 NPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENXXXXXXXXXXXXMPIRTQFIISG 451
            +PKRTRFRKQHRGR+KGISYRGN ICFGRYALQALEP WITSRQIEAGRRAMTRN+RRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAEN            MPI+TQFIISG
Sbjct:    3 SPKRTRFRKQHRGRLKGISYRGNRICFGRYALQALEPTWITSRQIEAGRRAMTRNIRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENIARRAISIAASKMPIKTQFIISG 135          
The following BLAST results are available for this feature:
BLAST of CV713099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK16_CITSI2.862e-6590.9850S ribosomal protein L16, chloroplastic OS=Citrus... [more]
RK16_VIGUN3.498e-6384.6750S ribosomal protein L16, chloroplastic (Fragment... [more]
RK16_GOSBA4.569e-6387.9750S ribosomal protein L16, chloroplastic OS=Gossyp... [more]
RK16_VITVI5.967e-6387.9750S ribosomal protein L16, chloroplastic OS=Vitis ... [more]
RK16_MORIN1.329e-6286.4750S ribosomal protein L16, chloroplastic OS=Morus ... [more]
RK16_EUCGG1.329e-6287.2250S ribosomal protein L16, chloroplastic OS=Eucaly... [more]
RK16_HELAN1.736e-6284.5650S ribosomal protein L16, chloroplastic OS=Helian... [more]
RK16_GUIAB1.736e-6284.5650S ribosomal protein L16, chloroplastic OS=Guizot... [more]
RK16_GOSHI1.736e-6287.2250S ribosomal protein L16, chloroplastic OS=Gossyp... [more]
RK16_CARPA1.736e-6286.4750S ribosomal protein L16, chloroplastic OS=Carica... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002F06_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713099 ID=CV713099; Name=CV713099; organism=Citrus sinensis; type=EST; length=732bp
CTCATGTCCAGTTCTGTAGTAGAGATGGCATTGAGAAAGAACCATCAATT
ATAACCCCAAAAGAACAAGATTCCGTAAACAACATAGAGGAAGAATGAAA
GGGATATCTTATCGAGGTAATCATATTTGTTTCGGCAGATATGCTCTTCA
AGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGGCGCC
GCGCAATGACACGAAATGTACGGCGCGGTGGAAAAATATGGGTACGTATC
TTTCCAGACAAACCCGTTACACTAAGACCCACGGAAACCCGTATGGGGTC
CGGTAAAGGATCCCCCGAATATTGGGTAGCCGTCGTTAAACCGGGTAGAA
TACTTTATGAAATGAGTGGAGTAGCTGAAAATATAGCTCGAAAGGCTATT
TCAATAGCGGCGTCCAAAATGCCTATAAGAACTCAATTCATTATTTCGGG
ATAGGAATGTCGAAACAAAGGAAATAAATCTTGGGTATAAAAAATGCGGG
TCTTCCCTTTTTTTTTTTACTTCGTCCTTTCAGTGCTTTACTTTAAATTA
AACATTAAAAAAACGGACTCAAAAAACGATATGATTCAACCTCAAACCCA
TTTGAATGTAGCAGACAATAGCGGTGCCCGAGAATTGATGTGTATTCGAA
TCATAGGAGCCAGTAATCGTAGATATGCTCATATTGGTGACGTTATTGTT
GCTGTGATCAAGGAAGCAGTACCCAATACGCC
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