CV713077

Overview
NameCV713077
Unique NameCV713077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713077 vs. ExPASy Swiss-Prot
Match: VTC4_YEAST (Vacuolar transporter chaperone 4 OS=Saccharomyces cerevisiae GN=VTC4 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.570e-13
Identity = 57/193 (29.53%), Postives = 97/193 (50.26%), Query Frame = 1
Query:   55 MKFGKSLSNQIEETLPEWRDKFLSYKDLKKRLKLVEPYKGGDRPSKRPRFDESAVAGEDVKATDGYMSRE-EIDFISLLEDEMDKFNSFFVEKEEEYIIRLKELQDRVANAN---DSNEELIKI-----RKEIVDLHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQRVLQQPFFTTDLIYRLVK 606
            MKFG+ LS  +   + ++   ++SY DLK  L+                        +++   +G  ++E E DF+  LE E+DK  +F   K  E   R+KE+Q++V +     DSN    ++      +E+ D+  ++  L  +S LNYTG  KI+KK+DK+TG +++  F  R+  +PFF  +    +VK
Sbjct:    1 MKFGEHLSKSL---IRQYSYYYISYDDLKTELE------------------------DNLSKNNGQWTQELETDFLESLEIELDKVYTFCKVKHSEVFRRVKEVQEQVQHTVRLLDSNNPPTQLDFEILEEELSDIIADVHDLAKFSRLNYTGFQKIIKKHDKKTGFILKPVFQVRLDSKPFFKENYDELVVK 166          
BLAST of CV713077 vs. ExPASy Swiss-Prot
Match: VTC4_SCHPO (Vacuolar transporter chaperone 4 OS=Schizosaccharomyces pombe GN=vtc4 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.476e-13
Identity = 57/192 (29.69%), Postives = 90/192 (46.88%), Query Frame = 1
Query:   55 MKFGKSLSNQIEETLPEWRDKFLSYKDLKKRLKLVEPYKGGDRPSKRPRFDESAVAGEDVKATDGYMSREEIDFISLLEDEMDKFNSFFVEKEEEYIIRLK-------ELQDRVANANDSNE-ELIKIRKEIVDLHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQRVLQQPFFTTDLIYRLVK 606
            MKFG+ L    E  + E++  +++Y  LKK +K               R D+            G+   +E DF+ LLE E+DK  SF   K  E + R++       E+  R+ + N  NE +   +  E+ D+   +  L  +S LNYT   KI+KK+DK TG +++  F  R+  +PFF       +VK
Sbjct:    1 MKFGQLLK---ETLMYEYKYSYVNYDKLKKEIKR--------------RNDQG-----------GWSEEDESDFVELLEKELDKVYSFQKNKSAEVMERIRFCEEQTDEVVRRLDSDNPPNENDFAILETELTDIMATVHDLAKFSELNYTAFYKIIKKHDKHTGWILKPVFAARLNAKPFFKEQYDLLVVK 164          
BLAST of CV713077 vs. ExPASy Swiss-Prot
Match: NUC2_NEUCR (Ankyrin repeat protein nuc-2 OS=Neurospora crassa GN=nuc-2 PE=4 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.329e-12
Identity = 57/201 (28.36%), Postives = 94/201 (46.77%), Query Frame = 1
Query:   55 MKFGKSLSNQIEETLPEWRDKFLSYKDLKKRLKLVEPYKGGDRPSKRPRFDESAVAGEDVKATDGYMSREEIDFISLLEDEMDKFNSFFVEKEEEYIIRLKELQD-------RVANANDSNEELIKIRKEIVDLHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQRVLQ-QPFFTTDLIYRLVKQCEKMLDGL 633
            MKFGK +  +  E +PE+   F++YK LKK +K     K    P   P+ D     GE +  T   +   +  F   ++ E+DK N+ +V+KE E  IRLK L D       R    +  + +   +++       ++  L+ +  +N T   KILKK+DK   +  +  ++ RV++ +P F   +I  L  Q    L  L
Sbjct:    1 MKFGKQIQKRQLE-VPEYAASFVNYKALKKLIK-----KLSATPILPPQTDLRRAPGEPLD-TQSALQANKATFFFQIDRELDKVNACYVQKEAELKIRLKTLLDKKKALRSRSGGTSRRSTKFTTLQEGFQQFVNDLNKLQQFVEINGTAFSKILKKWDKTAKSKTKELYLSRVVEKRPAFNPTVISELSDQATTSLQEL 194          
BLAST of CV713077 vs. ExPASy Swiss-Prot
Match: VTC3_YEAST (Vacuolar transporter chaperone 3 OS=Saccharomyces cerevisiae GN=VTC3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11
Identity = 44/158 (27.85%), Postives = 77/158 (48.73%), Query Frame = 1
Query:   55 MKFGKSLSNQIEETLPEWRDKFLSYKDLKKRLKLVEPYKGGDRPSKRPRFDESAVAGEDVKATDGYMSREEIDFISLLEDEMDKFNSFFVEKEEEYIIRLKELQDRVANAND----SNEELIKIRKEIVDLHGEMVLLENYSALNYTGLVKILKKYDK 516
            M FG  L+N +    P W+D ++ Y+ LKK LK                    +V  +   + D +  R E DF+  L+ E++K  +F + K    + +L +L++   +A      ++E+     +E +D   E   L+N+  LN+TG +KI+KK+DK
Sbjct:    1 MLFGIKLANDV---YPPWKDSYIDYERLKKLLK-------------------ESVIHDGRSSVDSWSERNESDFVEALDKELEKVYTFQISKYNAVLRKLDDLEENTKSAEKIQKINSEQFKNTLEECLD---EAQRLDNFDRLNFTGFIKIVKKHDK 133          
BLAST of CV713077 vs. ExPASy Swiss-Prot
Match: XPR1_CRIGR (Xenotropic and polytropic retrovirus receptor 1 homolog OS=Cricetulus griseus GN=XPR1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.141e-11
Identity = 63/221 (28.51%), Postives = 95/221 (42.99%), Query Frame = 1
Query:   55 MKFGKSLSNQIEETLPEWRDKFLSYKDLKKRLKLVEPYKGGDRPSKRPRFDESAVAGEDVKATDGYMSREEIDFISLLEDEMDKFNSFFVEKEEEYIIRLKELQDRVANANDSNEELIKI------RKEIVDLHGE---------------------MVLLENYSALNYTGLVKILKKYDK----RTGALIRLPFIQRVLQQPFFTTDLIYRLVKQCEKML 624
            MKF + LS  I    PEWR +++ Y+  K  L     Y   D+       DE  V          Y ++ E  F    E E+ K N+F+ EK  E   R   LQ+ + ++ D+  E I +      RK +  L  E                     ++LL+NY  LN+TG  KILKK+DK      GA  R+  ++     PF+T   I +L+ + E ++
Sbjct:    1 MKFAEHLSAHIT---PEWRKQYIQYEAFKDML-----YSAQDQAPSVEVTDEDTVKR--------YFAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQRESIGVTTLRQRRKPVFHLSHEERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVGHVE---VAPFYTCKKINQLISETEAVV 202          
BLAST of CV713077 vs. ExPASy Swiss-Prot
Match: XPR1_HUMAN (Xenotropic and polytropic retrovirus receptor 1 OS=Homo sapiens GN=XPR1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.358e-11
Identity = 63/221 (28.51%), Postives = 96/221 (43.44%), Query Frame = 1
Query:   55 MKFGKSLSNQIEETLPEWRDKFLSYKDLKKRLKLVEPYKGGDRPSKRPRFDESAVAGEDVKATDGYMSREEIDFISLLEDEMDKFNSFFVEKEEEYIIRLKELQDRVANANDSNEE------LIKIRKEIVDLHGE---------------------MVLLENYSALNYTGLVKILKKYDK----RTGALIRLPFIQRVLQQPFFTTDLIYRLVKQCEKML 624
            MKF + LS  I    PEWR +++ Y+  K  L     Y   D+       DE  V          Y ++ E  F    E E+ K N+F+ EK  E   R   LQ+ + ++ D+ +E      L + RK +  L  E                     ++LL+NY  LN+TG  KILKK+DK      GA  R+  ++     PF+T   I +L+ + E ++
Sbjct:    1 MKFAEHLSAHIT---PEWRKQYIQYEAFKDML-----YSAQDQAPSVEVTDEDTVKR--------YFAKFEEKFFQTCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHEERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHVE---VAPFYTCKKINQLISETEAVV 202          
The following BLAST results are available for this feature:
BLAST of CV713077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
VTC4_YEAST2.570e-1329.53Vacuolar transporter chaperone 4 OS=Saccharomyces ... [more]
VTC4_SCHPO7.476e-1329.69Vacuolar transporter chaperone 4 OS=Schizosaccharo... [more]
NUC2_NEUCR6.329e-1228.36Ankyrin repeat protein nuc-2 OS=Neurospora crassa ... [more]
VTC3_YEAST1.410e-1127.85Vacuolar transporter chaperone 3 OS=Saccharomyces ... [more]
XPR1_CRIGR3.141e-1128.51Xenotropic and polytropic retrovirus receptor 1 ho... [more]
XPR1_HUMAN5.358e-1128.51Xenotropic and polytropic retrovirus receptor 1 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0002E19_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002E19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713077 ID=CV713077; Name=CV713077; organism=Citrus sinensis; type=EST; length=635bp
GAGCCCCTTCACTTTCCCTCTTAATTTCTCATCAAGCAAACAAGCCCAAA
AGCCATGAAATTTGGCAAGAGCTTGAGCAACCAGATCGAGGAGACCTTGC
CTGAATGGCGGGACAAGTTCCTCTCCTACAAGGACCTCAAGAAGAGGCTG
AAGCTCGTGGAGCCTTACAAAGGCGGTGATAGGCCTAGTAAACGGCCCAG
ATTTGACGAATCTGCGGTCGCCGGAGAAGACGTCAAGGCCACTGATGGTT
ATATGTCCAGGGAGGAGATCGATTTCATTAGTTTGTTGGAGGACGAAATG
GATAAATTCAACTCATTCTTCGTTGAGAAGGAGGAAGAATACATCATCAG
GTTAAAGGAACTACAGGATAGGGTAGCAAATGCAAATGATTCCAACGAAG
AGCTAATAAAAATCAGGAAGGAGATTGTTGACTTACACGGCGAGATGGTT
TTGTTGGAAAATTACAGTGCTCTGAACTATACAGGATTGGTGAAGATACT
CAAGAAGTATGACAAAAGAACTGGTGCTTTGATCCGTTTGCCTTTTATAC
AGAGGGTCTTACAGCAGCCCTTCTTTACTACCGACTTGATTTACAGGCTC
GTAAAGCAATGTGAAAAGATGTTGGATGGCCTCTT
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