CV713064
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV713064 vs. ExPASy Swiss-Prot
Match: RTL2_ORYSJ (Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica GN=Os05g0271300 PE=2 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 1.100e-24 Identity = 61/133 (45.86%), Postives = 80/133 (60.15%), Query Frame = 1 Query: 1 DLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYK 399 DL+KLW + R L EPI+T E + +QP VT+L +LCQK+GK K W+K + +V+V G V SSEQK IAKLNAAR+A KLA + DE E+ KQKL+E C ++ WPKP +K Sbjct: 187 DLEKLWKVTRWLFEPIITAETIDEQP--VTMLHELCQKHGKMAQFKTWQKGGMTVVNVFVAGELVGIGSSEQKVIAKLNAARDATRKLAGAKKQVLTTGVGNGLGDEIGELRECKQKLNEQCSRQNWPKPIFK 317
BLAST of CV713064 vs. ExPASy Swiss-Prot
Match: DICER_ARATH (Endoribonuclease Dicer homolog OS=Arabidopsis thaliana GN=CAF PE=1 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17 Identity = 61/201 (30.35%), Postives = 102/201 (50.75%), Query Frame = 1 Query: 1 DLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL-----EKLAQSMPVNCDVCEIFDDIDEKFEIEA-------AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTD--GVLFITGDEKSRVKDAENSAASMMLRALRES 561 D W +F+ LL+P+VT E L P V L + CQ+ + ++ K R V++DG V A + QK++A+ AAR AL +++A+S + + +D E +Q L+++C +K WP PSY+ K+ GP+H K+F V++ T+D G+ VK A++SAA ++L L ++ Sbjct: 1709 DTTAAWKVFQPLLQPMVTPETLPMHP--VRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKT 1907
BLAST of CV713064 vs. ExPASy Swiss-Prot
Match: DCL1_ORYSJ (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.473e-16 Identity = 58/187 (31.02%), Postives = 98/187 (52.41%), Query Frame = 1 Query: 1 DLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEA-AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTD--GVLFITGDEKSRVKDAENSAASMMLRAL 552 D +W +F+ LL P+VT E L P V L + CQ+ + ++ K R V+VDG + A + QK++A+ AAR AL L + E D ++K + +Q L+++C +++WP P Y+ + GP+H K+F+ +V++ T+D G+ VK A++SAA ++L L Sbjct: 1688 DTSVVWKVFQPLLHPMVTPETLPMHP--VRELQERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNALVVLKEKETATKKEDE--RDGEKKNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELL 1870 The following BLAST results are available for this feature:
BLAST of CV713064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CV713064 ID=CV713064; Name=CV713064; organism=Citrus sinensis; type=EST; length=731bpback to top |