CV713064

Overview
NameCV713064
Unique NameCV713064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713064 vs. ExPASy Swiss-Prot
Match: RTL2_ORYSJ (Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica GN=Os05g0271300 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.100e-24
Identity = 61/133 (45.86%), Postives = 80/133 (60.15%), Query Frame = 1
Query:    1 DLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYK 399
            DL+KLW + R L EPI+T E + +QP  VT+L +LCQK+GK    K W+K    + +V+V G  V   SSEQK IAKLNAAR+A  KLA +              DE  E+   KQKL+E C ++ WPKP +K
Sbjct:  187 DLEKLWKVTRWLFEPIITAETIDEQP--VTMLHELCQKHGKMAQFKTWQKGGMTVVNVFVAGELVGIGSSEQKVIAKLNAARDATRKLAGAKKQVLTTGVGNGLGDEIGELRECKQKLNEQCSRQNWPKPIFK 317          
BLAST of CV713064 vs. ExPASy Swiss-Prot
Match: DICER_ARATH (Endoribonuclease Dicer homolog OS=Arabidopsis thaliana GN=CAF PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 61/201 (30.35%), Postives = 102/201 (50.75%), Query Frame = 1
Query:    1 DLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL-----EKLAQSMPVNCDVCEIFDDIDEKFEIEA-------AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTD--GVLFITGDEKSRVKDAENSAASMMLRALRES 561
            D    W +F+ LL+P+VT E L   P  V  L + CQ+  + ++ K  R        V++DG  V  A + QK++A+  AAR AL     +++A+S   + +     +D  E              +Q L+++C +K WP PSY+  K+ GP+H K+F   V++ T+D        G+    VK A++SAA ++L  L ++
Sbjct: 1709 DTTAAWKVFQPLLQPMVTPETLPMHP--VRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKT 1907          
BLAST of CV713064 vs. ExPASy Swiss-Prot
Match: DCL1_ORYSJ (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.473e-16
Identity = 58/187 (31.02%), Postives = 98/187 (52.41%), Query Frame = 1
Query:    1 DLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEA-AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTD--GVLFITGDEKSRVKDAENSAASMMLRAL 552
            D   +W +F+ LL P+VT E L   P  V  L + CQ+  + ++ K  R        V+VDG  +  A + QK++A+  AAR AL  L +         E   D ++K   +   +Q L+++C +++WP P Y+   + GP+H K+F+ +V++ T+D        G+    VK A++SAA ++L  L
Sbjct: 1688 DTSVVWKVFQPLLHPMVTPETLPMHP--VRELQERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNALVVLKEKETATKKEDE--RDGEKKNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELL 1870          
The following BLAST results are available for this feature:
BLAST of CV713064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RTL2_ORYSJ1.100e-2445.86Ribonuclease 3-like protein 2 OS=Oryza sativa subs... [more]
DICER_ARATH4.950e-1730.35Endoribonuclease Dicer homolog OS=Arabidopsis thal... [more]
DCL1_ORYSJ5.473e-1631.02Endoribonuclease Dicer homolog 1 OS=Oryza sativa s... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0002E09_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713064 ID=CV713064; Name=CV713064; organism=Citrus sinensis; type=EST; length=731bp
GATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTTTAGAGCCAATTGT
AACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTTACACTATTGTTTA
AGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAAGCACTGGAGAAAG
AACAGAAAAAATATTGCCAGTGTATACGTGGACGGCAGTTTTGTAGCCTC
GGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAATGCTGCAAGGGAAG
CTTTGGAAAAGTTAGCACAATCAATGCCAGTTAATTGTGATGTCTGTGAA
ATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAGCAGCCAAACAGAA
ATTGCATGAACTCTGCGGAAAGAAGAAGTGGCCCAAACCAAGTTACAAGA
TTGAGAAAGATGAGGGTCCTTCACATGATAAGAAATTTATGTCTGCAGTT
CAGATTGCAACTACAGATGGTGTGCTTTTTATCACGGGAGATGAAAAATC
AAGAGTAAAGGATGCAGAGAATTCTGCCGCTTCCATGATGCTTCGTGCCT
TGCGTGAATCCACTTATCTCTGCTAAATGCATGAATGGAATTAGAAACCA
CTATCATCTGACTGAACTGTCGTTTGACTACATAATACCACCGGCAAGTC
CAGTTCTGAAATATATTAATACTTGTATTCACCATTGAGCTTGATGTACC
TGTAACAGCATTGAATCGCCTGTAATTTTAG
back to top