CX047626

Overview
NameCX047626
Unique NameCX047626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047626 vs. ExPASy Swiss-Prot
Match: TGA2_ARATH (Transcription factor TGA2 OS=Arabidopsis thaliana GN=TGA2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.195e-14
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = -3
Query:  418 ETLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMARPRE 543
            +TLQQM R+LTTRQSARALLAIHDYFSRLRALSSLW+ARPRE
Sbjct:  289 QTLQQMIRVLTTRQSARALLAIHDYFSRLRALSSLWLARPRE 330          
BLAST of CX047626 vs. ExPASy Swiss-Prot
Match: TGA21_TOBAC (TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.195e-14
Identity = 37/42 (88.10%), Postives = 42/42 (100.00%), Query Frame = -3
Query:  418 ETLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMARPRE 543
            +TLQQMHR+LTTRQSARALLAI++YFSRLRALSSLW+ARPRE
Sbjct:  412 QTLQQMHRVLTTRQSARALLAINEYFSRLRALSSLWLARPRE 453          
BLAST of CX047626 vs. ExPASy Swiss-Prot
Match: HBP1C_WHEAT (Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.341e-14
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = -3
Query:  418 ETLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMARPRE 543
            +TLQQM RILTTRQSARALLAI DYFSRLRALSSLW+ARPRE
Sbjct:  435 QTLQQMQRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 476          
BLAST of CX047626 vs. ExPASy Swiss-Prot
Match: TGA6_ARATH (Transcription factor TGA6 OS=Arabidopsis thaliana GN=TGA6 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.858e-13
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = -3
Query:  418 ETLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMARPRE 543
            +TLQQM R+LTTRQSARALLAIHDY SRLRALSSLW+ARPRE
Sbjct:  289 QTLQQMLRVLTTRQSARALLAIHDYSSRLRALSSLWLARPRE 330          
BLAST of CX047626 vs. ExPASy Swiss-Prot
Match: HBP1B_WHEAT (Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.577e-12
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = -3
Query:  418 ETLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMARPRE 543
            +TLQQM RILTTRQSARALL I DY SRLRALSSLW+ARP+E
Sbjct:  291 QTLQQMQRILTTRQSARALLVISDYSSRLRALSSLWLARPKE 332          
BLAST of CX047626 vs. ExPASy Swiss-Prot
Match: TGA5_ARATH (Transcription factor TGA5 OS=Arabidopsis thaliana GN=TGA5 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = -3
Query:  418 ETLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMARPRE 543
            +T QQM R+LTTRQSARALLA+H+Y  RLRALSSLW+ARPRE
Sbjct:  289 QTYQQMVRLLTTRQSARALLAVHNYTLRLRALSSLWLARPRE 330          
BLAST of CX047626 vs. ExPASy Swiss-Prot
Match: TGA4_ARATH (Transcription factor TGA4 OS=Arabidopsis thaliana GN=TGA4 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.060e-11
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = -3
Query:  418 ETLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMARPRE 543
            ETLQQMHRILTTRQ+AR LLA+ +YF RLRALSS W AR RE
Sbjct:  321 ETLQQMHRILTTRQAARGLLALGEYFQRLRALSSSWAARQRE 362          
BLAST of CX047626 vs. ExPASy Swiss-Prot
Match: TGA3_ARATH (Transcription factor TGA3 OS=Arabidopsis thaliana GN=TGA3 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.631e-11
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = -3
Query:  418 ETLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWMARPRE 543
            +TLQQM +ILTTRQ+AR LLA+ +YF RLRALSSLW ARPRE
Sbjct:  341 QTLQQMSKILTTRQAARGLLALGEYFHRLRALSSLWAARPRE 382          
The following BLAST results are available for this feature:
BLAST of CX047626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TGA2_ARATH2.195e-1490.48Transcription factor TGA2 OS=Arabidopsis thaliana ... [more]
TGA21_TOBAC2.195e-1488.10TGACG-sequence-specific DNA-binding protein TGA-2.... [more]
HBP1C_WHEAT8.341e-1490.48Transcription factor HBP-1b(c1) (Fragment) OS=Trit... [more]
TGA6_ARATH1.858e-1388.10Transcription factor TGA6 OS=Arabidopsis thaliana ... [more]
HBP1B_WHEAT4.577e-1283.33Transcription factor HBP-1b(c38) OS=Triticum aesti... [more]
TGA5_ARATH2.271e-1178.57Transcription factor TGA5 OS=Arabidopsis thaliana ... [more]
TGA4_ARATH5.060e-1178.57Transcription factor TGA4 OS=Arabidopsis thaliana ... [more]
TGA3_ARATH8.631e-1176.19Transcription factor TGA3 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_15E01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-15E01-J2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047626 ID=CX047626; Name=CX047626; organism=Citrus sinensis; type=EST; length=545bp
TTTTTTTTTTTTTTTTTCTTAGAAAAAAAAACTTAATAACTTTATCTCAT
CAAACATTCAAATTCATTTGAGAAACATTGGTTACAATGACAACAGACAC
TGGAATAACACTTACAACTTACAAGAGTCCCAGAGAAGATAACGATTATG
CGGCGAATAATAAACAGAAATACATATCCATTTCAGAGAATAATGGACAA
ATTCTACCAGTACGACCTATTAACAGAAAAACCAGTACCAACACTAAAGT
ATAAAAATCTAGGACATAAGAAAATCTAAACAGATAAAGGGGGGAAAAAT
TGTCACAACTACAGAACAATTATCTTTTTCAGGATGTAATTCAGATTCCT
TCCCCCCCCCCCTCTCAAGGTGCATAATTTCACAAATCTACCTGGCAAAA
AACACAATGCATCTTCACTCTCTTGGGCGGGCCATCCAGAGGGAACTAAG
AGCACGTAGTCGGGAGAAATAATCATGGATTGCAAGGAGTGCACGAGCAG
ACTGGCGCGTTGTCAATATTCGGTGCATTTGTTGTAATGTTTCCT
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