CV713063

Overview
NameCV713063
Unique NameCV713063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713063 vs. ExPASy Swiss-Prot
Match: RTL2_ORYSJ (Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica GN=Os05g0271300 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.704e-25
Identity = 62/134 (46.27%), Postives = 81/134 (60.45%), Query Frame = -1
Query:  419 FDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYK 820
            FDL+KLW + R L EPI+T E + +QP  VT+L +LCQK+GK    K W+K    + +V+V G  V   SSEQK IAKLNAAR+A  KLA +              DE  E+   KQKL+E C ++ WPKP +K
Sbjct:  186 FDLEKLWKVTRWLFEPIITAETIDEQP--VTMLHELCQKHGKMAQFKTWQKGGMTVVNVFVAGELVGIGSSEQKVIAKLNAARDATRKLAGAKKQVLTTGVGNGLGDEIGELRECKQKLNEQCSRQNWPKPIFK 317          
BLAST of CV713063 vs. ExPASy Swiss-Prot
Match: DICER_ARATH (Endoribonuclease Dicer homolog OS=Arabidopsis thaliana GN=CAF PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.037e-17
Identity = 61/201 (30.35%), Postives = 102/201 (50.75%), Query Frame = -1
Query:  257 DLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL-----EKLAQSMPVNCDVCEIFDDIDEKFEIEA-------AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTD--GVLFITGDEKSRVKDAENSAASMMLRALRES 817
            D    W +F+ LL+P+VT E L   P  V  L + CQ+  + ++ K  R        V++DG  V  A + QK++A+  AAR AL     +++A+S   + +     +D  E              +Q L+++C +K WP PSY+  K+ GP+H K+F   V++ T+D        G+    VK A++SAA ++L  L ++
Sbjct: 1709 DTTAAWKVFQPLLQPMVTPETLPMHP--VRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKT 1907          
BLAST of CV713063 vs. ExPASy Swiss-Prot
Match: DCL1_ORYSJ (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.996e-16
Identity = 58/188 (30.85%), Postives = 99/188 (52.66%), Query Frame = -1
Query:  266 FDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEA-AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTD--GVLFITGDEKSRVKDAENSAASMMLRAL 820
            +D   +W +F+ LL P+VT E L   P  V  L + CQ+  + ++ K  R        V+VDG  +  A + QK++A+  AAR AL  L +         E   D ++K   +   +Q L+++C +++WP P Y+   + GP+H K+F+ +V++ T+D        G+    VK A++SAA ++L  L
Sbjct: 1687 YDTSVVWKVFQPLLHPMVTPETLPMHP--VRELQERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNALVVLKEKETATKKEDE--RDGEKKNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELL 1870          
The following BLAST results are available for this feature:
BLAST of CV713063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RTL2_ORYSJ2.704e-2546.27Ribonuclease 3-like protein 2 OS=Oryza sativa subs... [more]
DICER_ARATH6.037e-1730.35Endoribonuclease Dicer homolog OS=Arabidopsis thal... [more]
DCL1_ORYSJ2.996e-1630.85Endoribonuclease Dicer homolog 1 OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0002E09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713063 ID=CV713063; Name=CV713063; organism=Citrus sinensis; type=EST; length=820bp
AAATCTCGTACAGAACAATAATTATCATAGGAGGAAAAACACCATGTTTT
CCCAGCAATCTCAAGTTGTTAATGGATTGAAGCCAACTAAAATTACAGGC
GATTCAATGCTGTTACAGGTACATCAAGCTCAATGGTGAATACAAGTATT
AATATATTTCAGAACTGGACTTGCCGGTGGTATTATGTAGTCAAACGACA
GTTCAGTCAGATGATAGTGGTTTCTAATTCCATTCATGCATTTAGCAGAG
ATAAGTGGATTCACGCAAGGCACGAAGCATCATGGAAGCGGCAGAATTCT
CTGCATCCTTTACTCTTGATTTTTCATCTCCCGTGATAAAAAGCACACCA
TCTGTAGTTGCAATCTGAACTGCAGACATAAATTTCTTATCATGTGAAGG
ACCCTCATCTTTCTCAATCTTGTAACTTGGTTTGGGCCACTTCTTCTTTC
CGCAGAGTTCATGCAATTTCTGTTTGGCTGCTTCAATCTCAAACTTCTCA
TCAATATCATCAAAAATTTCACAGACATCACAATTAACTGGCATTGATTG
TGCTAACTTTTCCAAAGCTTCCCTTGCAGCATTAAGCTTAGCAATTTCCT
TCTGCTCAGAAGAAGCCGAGGCTACAAAACTGCCGTCCACGTATACACTG
GCAATATTTTTTCTGTTCTTTCTCCAGTGCTTGATATCAACTTGCTTTCC
ATTTTTCTGACATAACTTAAACAATAGTGTAACTGGTTGGGGCTGTTGCT
GTAATTCTTCAAGGGTTACAATTGGCTCTAAAAGACCCCTAAAGATCATC
CAGAGCTTTTGGAGATCAAA
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