CV713061

Overview
NameCV713061
Unique NameCV713061
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713061 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.645e-34
Identity = 60/88 (68.18%), Postives = 72/88 (81.82%), Query Frame = -3
Query:  136 MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 399
            MKL   T+++ +L+++ SL++   AGS FCDSKC  RC +AG+ DRCLKYCGICCE+CKCVPSGTYGNKHECPCYRDK N KGK KCP
Sbjct:    1 MKLFLLTLLLVTLVITPSLIQTTMAGSSFCDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
BLAST of CV713061 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.490e-15
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = -3
Query:  136 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 312
            C  KC  RC +   +  C+ +C  CC  C CVP+GTYGNK  CPCY +   K+G PKCP
Sbjct:   54 CQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of CV713061 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.091e-13
Identity = 27/59 (45.76%), Postives = 34/59 (57.63%), Query Frame = -3
Query:  136 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 312
            C  +C  RC     +  C+ +C  CC  C CVP G YGNK  CPCY +   ++GKPKCP
Sbjct:   38 CKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of CV713061 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.084e-13
Identity = 27/59 (45.76%), Postives = 34/59 (57.63%), Query Frame = -3
Query:  136 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 312
            C S+C  RCK+      C+ +C  CC  C CVP G YGNK  C CY +   ++G PKCP
Sbjct:   48 CPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
BLAST of CV713061 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.151e-12
Identity = 26/59 (44.07%), Postives = 32/59 (54.24%), Query Frame = -3
Query:  136 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 312
            C  +C +RC ++     CL+ C  CC  C CVP GT GN H CPCY       G+ KCP
Sbjct:   41 CGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of CV713061 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.727e-12
Identity = 26/59 (44.07%), Postives = 33/59 (55.93%), Query Frame = -3
Query:  136 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 312
            C  +C  RC ++   + CL+ C  CC  C CVP GT GN H CPCY     + G+ KCP
Sbjct:   41 CGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of CV713061 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.438e-11
Identity = 26/59 (44.07%), Postives = 31/59 (52.54%), Query Frame = -3
Query:  136 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 312
            C S C  RC+ +     C + CG CC  C CVP GTYGN  +C CY       G+ KCP
Sbjct:   40 CGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
BLAST of CV713061 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.714e-11
Identity = 26/59 (44.07%), Postives = 29/59 (49.15%), Query Frame = -3
Query:  136 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 312
            C   CA RC+ +     C + CG CC  C CVP GT GN   CPCY        K KCP
Sbjct:   46 CGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
The following BLAST results are available for this feature:
BLAST of CV713061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SNAK1_SOLTU1.645e-3468.18Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
GAST1_SOLLC8.490e-1549.15Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC2.091e-1345.76Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GASA4_ARATH6.084e-1345.76Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
GASA2_ARATH5.151e-1244.07Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA3_ARATH6.727e-1244.07Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA1_ARATH7.438e-1144.07Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
SNAK2_SOLTU9.714e-1144.07Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0002E08_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713061 ID=CV713061; Name=CV713061; organism=Citrus sinensis; type=EST; length=419bp
TTATTATTTAAGAATAATATAAGTGCATTAACATTCCACCACCATCATAA
TATAATACTACCAATAATAATAATACTGTTTACAGAACATAATTAAAGCA
GATGCATTTGAATTTTGATGCGGTTTCGAAATTCAAGGGCACTTGGGCTT
CCCCTTCTTGTTAACCTTGTCCCTGTAGCAAGGGCACTCATGCTTGTTTC
CGTAAGTCCCAGAAGGCACACACTTGCAGTCCTCACAGCATATCCCGCAG
TACTTCAAGCACCGGTCCTGCACTCCTGCTTGCTTGCACCTTTCCGCACA
CTTGCTGTCACAAAAGGGTGATCCAGCCGTGGCAGGCTCCAAGAGAGAGA
AGCTGAGGATAAGAGAGCAAACAACAACAGTTGTAAAGTGAAGCTTCATT
TTTTCTGCTTTCCTTTCAA
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