CV713059

Overview
NameCV713059
Unique NameCV713059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713059 vs. ExPASy Swiss-Prot
Match: P2R3C_RAT (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Rattus norvegicus GN=Ppp2r3c PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.416e-18
Identity = 69/223 (30.94%), Postives = 106/223 (47.53%), Query Frame = 2
Query:  191 MLWVRNLRRFIGSGTGLGSEALMELETKRILLDIFRE--------KQQKSAEAGTIPSFYKKKPEEGSIS-HRVQRLAKYRFLKKQSXXXXXXXXXXXMWVCLRENCVIDDATGAEKM-NYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPSLAQLRDMPTGFIQMY 826
            M W   LRR + S          E E K   +D+F +        ++  +    TIP FY + P E  +   +++  ++  FL+++S           +W  L ++  I    G E M NYE+F  +     E+ GPKC++FF+   F K    D  GR++I+ F+ YVMR V L Q RI +S  D    G+L+  ++E YI  LIP+L QL  +   F   Y
Sbjct:    1 MDWKDVLRRRLASPNSDPKRKKSEQELKDEEMDLFTKYYSEWKGGRKNTNEFYKTIPRFYYRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKH-QIPPMIGEEAMINYENFLKVG----EKAGPKCKQFFTAKVFAKLLHTDSYGRVSIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFY 218          
BLAST of CV713059 vs. ExPASy Swiss-Prot
Match: P2R3C_MOUSE (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Mus musculus GN=Ppp2r3c PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.686e-18
Identity = 70/223 (31.39%), Postives = 106/223 (47.53%), Query Frame = 2
Query:  191 MLWVRNLRRFIGSGTGLGSEALMELETKRILLDIFRE--------KQQKSAEAGTIPSFYKKKPEEGSIS-HRVQRLAKYRFLKKQSXXXXXXXXXXXMWVCLRENCVIDDATGAEKM-NYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPSLAQLRDMPTGFIQMY 826
            M W   LRR + S          E E K   +D+F +        ++  +    TIP FY + P E  +   +++  ++  FL+++S           +W  L ++  I    G E M NYE+F  +     E+ GPKC++FF+   F K    D  GRI+I+ F+ YVMR V L Q RI +S  D    G+L+  ++E YI  LIP+L QL  +   F   Y
Sbjct:    1 MDWKDVLRRRLASPNTDPKRKKSEQELKDEEMDLFTKYYSEWKGGRKNTNEFYKTIPRFYYRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKH-QIPPMIGEEAMINYENFLKVG----EKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFY 218          
BLAST of CV713059 vs. ExPASy Swiss-Prot
Match: P2R3C_BOVIN (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Bos taurus GN=PPP2R3C PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17
Identity = 65/222 (29.28%), Postives = 105/222 (47.30%), Query Frame = 2
Query:  191 MLWVRNLRRFIGSGTGLGSEALMELETKRILLDIFRE--------KQQKSAEAGTIPSFYKKKPEEGSIS-HRVQRLAKYRFLKKQSXXXXXXXXXXXMWVCLRENCVIDDATGAEKMNYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPSLAQLRDMPTGFIQMY 826
            M W   LRR + + +    +   E E K   +D+F +        ++  +    TIP FY + P E  +   +++  ++  FL+++S           +W  L ++           +NYE+F  +     E+ GPKC++FF+   F K    D  GRI+I+ F+ YVMR V L Q RI +S  D    G+L+  ++E YI  LIP+L QL  +   F   Y
Sbjct:    1 MDWKEILRRRLATPSTSPHKKKSEQELKDEEMDLFTKYYSEWKGGRKNTNEFYKTIPRFYYRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINYENFLKVG----EKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFY 218          
BLAST of CV713059 vs. ExPASy Swiss-Prot
Match: P2R3C_HUMAN (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Homo sapiens GN=PPP2R3C PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.071e-16
Identity = 64/222 (28.83%), Postives = 104/222 (46.85%), Query Frame = 2
Query:  191 MLWVRNLRRFIGSGTGLGSEALMELETKRILLDIFRE--------KQQKSAEAGTIPSFYKKKPEEGSIS-HRVQRLAKYRFLKKQSXXXXXXXXXXXMWVCLRENCVIDDATGAEKMNYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPSLAQLRDMPTGFIQMY 826
            M W   LRR + +     ++   E E K   +D+F +        ++  +    TIP FY + P E  +   +++  ++  FL+++S           +W  L ++           +NYE+F  +     E+ G KC++FF+   F K    D  GRI+I+ F+ YVMR V L Q RI +S  D    G+L+  ++E YI  LIP+L QL  +   F   Y
Sbjct:    1 MDWKEVLRRRLATPNTCPNKKKSEQELKDEEMDLFTKYYSEWKGGRKNTNEFYKTIPRFYYRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINYENFLKVG----EKAGAKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFY 218          
BLAST of CV713059 vs. ExPASy Swiss-Prot
Match: P2R3C_XENTR (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Xenopus tropicalis GN=ppp2r3c PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.445e-15
Identity = 67/218 (30.73%), Postives = 104/218 (47.71%), Query Frame = 2
Query:  191 MLWVRNLRRFIG-SGTGLGSEALMELETKRILLDIFREKQQ--KSAEAGTIPSFYKKKPEEGSI-SHRVQRLAKYRFLKKQSXXXXXXXXXXXMWVCLRENCVIDDATGAEKM-NYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPSLAQLRDMPTGFIQMY 826
            M W R+L+  +   G    SE  M+ E   +  + + E +   K + A  IP FY + P E  +   +++  ++  FL+++S           +W  L ++       G E M NY +F  +     E+ G KC+ FF+   F K    D  GRI+I+ F+ YVMR V L Q RI +S  D    G+L+  ++E YI  LIP+L QL  +   F   Y
Sbjct:    1 MDWKRSLKEKLRRDGYVRKSEQEMKEEEMSLFTNYYTEWKGGGKVSSAQNIPRFYYRLPAEDEVLQQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKH-QSPPLIGEEAMINYTNFQTVG----EKAGEKCKTFFTSKVFSKLIPNDPYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFY 213          
BLAST of CV713059 vs. ExPASy Swiss-Prot
Match: P2R3C_DANRE (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Danio rerio GN=ppp2r3c PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.876e-15
Identity = 56/168 (33.33%), Postives = 85/168 (50.60%), Query Frame = 2
Query:  332 IPSFYKKKPEEGSI-SHRVQRLAKYRFLKKQSXXXXXXXXXXXMWVCLRENCVIDDATGAEKM-NYEDFCHIASVCTEQIGPKCRRFFSPSNFMKF-EKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGFLQPHEMEAYIRGLIPSLAQLRDMPTGFIQMY 826
            IP FY + P E  +   +++  ++  FL+++S           +W  L ++ V    TG E M +YE F  +     E+ G KC+ FF+   + K    D  GRI+I+ F+ YVMR V L Q RI +S  D    G+L+  ++E YI  LIP+L QL  +   F   Y
Sbjct:   59 IPRFYYRLPAEDEVLMQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQV-PPTTGDEAMISYESFLKVG----EKAGTKCKLFFTARVYAKLLHNDPYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFY 221          
The following BLAST results are available for this feature:
BLAST of CV713059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
P2R3C_RAT7.416e-1830.94Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_MOUSE9.686e-1831.39Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_BOVIN2.158e-1729.28Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_HUMAN1.071e-1628.83Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_XENTR3.445e-1530.73Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_DANRE5.876e-1533.33Serine/threonine-protein phosphatase 2A regulatory... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0002E07_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713059 ID=CV713059; Name=CV713059; organism=Citrus sinensis; type=EST; length=846bp
CTAGGGGTTTAATTCATTTCTACAAATTCTGTAAATTTTATTTAACAAAT
TACAGGGTGAAAAAGTTGAACTTGTTCGAGTTTACTGAAGAGTCGAATTA
GTTTCTTGGATTCGGCCGGCCATGTACAGTGGGTCCAGTGATGGCGAGAG
TCACGAGGCCGCGCAGCGAAAGATCCCGCCGGCTTCGTCAATGCTTTGGG
TCCGAAACTTGCGTCGCTTCATTGGATCCGGTACCGGCCTTGGATCCGAA
GCCTTGATGGAGCTTGAGACAAAGAGAATTTTGCTTGATATATTTAGAGA
GAAGCAACAGAAAAGTGCTGAAGCTGGCACAATTCCCAGCTTCTACAAGA
AGAAACCTGAAGAAGGGTCCATCAGTCACAGGGTCCAGAGACTTGCGAAA
TATCGGTTTTTAAAGAAGCAATCAGATCTTTTACTAAATGCTGATGATCT
GGATGCAATGTGGGTTTGCTTGAGAGAAAACTGTGTTATTGATGATGCCA
CTGGTGCAGAAAAGATGAATTATGAAGATTTTTGCCACATTGCGTCAGTA
TGTACTGAGCAAATAGGCCCTAAGTGTAGACGTTTCTTCAGCCCGTCAAA
TTTTATGAAGTTTGAGAAAGATGAGTCGGGGAGAATCGCCATTTTGCCGT
TCTATCTATATGTGATGCGTACGGTTTCACTTACACAAGCCAGAATTGAT
ATGAGTGAGCTTGATGAAGATTCTGATGGTTTCCTTCAACCTCATGAAAT
GGAGGCTTATATACGTGGTCTGATTCCTAGTCTGGCACAACTACGTGATA
TGCCAACAGGCTTTATTCAAATGTATTGTCGGATAGCTGCACACAA
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