CV713052

Overview
NameCV713052
Unique NameCV713052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_CITSI (ATP synthase subunit a, chloroplastic OS=Citrus sinensis GN=atpI PE=3 SV=1)

HSP 1 Score: 387.497 bits (994), Expect = 3.380e-107
Identity = 197/215 (91.63%), Postives = 197/215 (91.63%), Query Frame = 3 
Query:    3 FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:   33 FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247
[Close]
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_GOSHI (ATP synthase subunit a, chloroplastic OS=Gossypium hirsutum GN=atpI PE=3 SV=1)

HSP 1 Score: 379.407 bits (973), Expect = 9.205e-105
Identity = 191/215 (88.84%), Postives = 195/215 (90.70%), Query Frame = 3 
Query:    3 FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            FQVHAQVLITSWVVIAILLGSA IAVRNPQT+PTA QNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGT+FLFIFVSNWSGALLPWKII+LPHGELAAPTNDINTTVALALLTS+AYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:   30 FQVHAQVLITSWVVIAILLGSAVIAVRNPQTIPTAGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKIIQLPHGELAAPTNDINTTVALALLTSVAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPSVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 244
[Close]
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_MANES (ATP synthase subunit a, chloroplastic OS=Manihot esculenta GN=atpI PE=3 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 4.568e-104
Identity = 189/215 (87.91%), Postives = 194/215 (90.23%), Query Frame = 3 
Query:    3 FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            FQVHAQVLITSWVVIAILLGSA +AVRNPQT+PT  QNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGT+FLFIFVSNW+GALLPWKII+LPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:   35 FQVHAQVLITSWVVIAILLGSAIVAVRNPQTIPTGGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWAGALLPWKIIQLPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPSVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 249
[Close]
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_GOSBA (ATP synthase subunit a, chloroplastic OS=Gossypium barbadense GN=atpI PE=3 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 4.568e-104
Identity = 190/215 (88.37%), Postives = 194/215 (90.23%), Query Frame = 3 
Query:    3 FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            FQVHAQVLITSWVVIAILLGSA IAVRNPQT+PTA QNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGT+FLFIFVSNWSGALLPWKII+LPHGELAAPTNDINTTVALALLTS+AYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLF SGIQALIFATLAAAYIGESMEGHH
Sbjct:   30 FQVHAQVLITSWVVIAILLGSAVIAVRNPQTIPTAGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKIIQLPHGELAAPTNDINTTVALALLTSVAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPSVVPIPVMFLGLFISGIQALIFATLAAAYIGESMEGHH 244
[Close]
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_CARPA (ATP synthase subunit a, chloroplastic OS=Carica papaya GN=atpI PE=3 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 7.792e-104
Identity = 189/214 (88.32%), Postives = 194/214 (90.65%), Query Frame = 3 
Query:    6 QVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            QVHAQVLITSWVVIAILLGSA IAVRNPQT+PTA QNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGT+FLFIFVSNWSGALLPWKII+LPHGELAAPTNDINTTVALALLTS+AYFYAGL+KKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:   34 QVHAQVLITSWVVIAILLGSAIIAVRNPQTIPTAGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKIIQLPHGELAAPTNDINTTVALALLTSVAYFYAGLTKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247
[Close]
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_POPTR (ATP synthase subunit a, chloroplastic OS=Populus trichocarpa GN=atpI PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.961e-103
Identity = 188/215 (87.44%), Postives = 191/215 (88.84%), Query Frame = 3 
Query:    3 FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            FQVHAQVLITSWVVI ILLGSA + VRNPQT+PT  QNFFEY+LEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYF KYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:   33 FQVHAQVLITSWVVIVILLGSAIVTVRNPQTIPTDGQNFFEYILEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPSVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247
[Close]
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_POPAL (ATP synthase subunit a, chloroplastic OS=Populus alba GN=atpI PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.961e-103
Identity = 188/215 (87.44%), Postives = 191/215 (88.84%), Query Frame = 3 
Query:    3 FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            FQVHAQVLITSWVVI ILLGSA + VRNPQT+PT  QNFFEY+LEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYF KYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:   33 FQVHAQVLITSWVVIVILLGSAIVTVRNPQTIPTDGQNFFEYILEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPSVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247
[Close]
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_OENPA (ATP synthase subunit a, chloroplastic OS=Oenothera parviflora GN=atpI PE=3 SV=1)

HSP 1 Score: 374.015 bits (959), Expect = 3.867e-103
Identity = 186/215 (86.51%), Postives = 193/215 (89.77%), Query Frame = 3 
Query:    3 FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            FQVH QVLITSWVVIAILLGSA IAVRNPQT+P  +QNFFEY+LEFIRDVSKTQIGEEYGPWVPFIGT+FLFIFVSNWSGALLPWK++ELPHGELAAPTNDINTTVALALLTS+AYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:   33 FQVHGQVLITSWVVIAILLGSASIAVRNPQTIPNDSQNFFEYILEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKLVELPHGELAAPTNDINTTVALALLTSVAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPSVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247
[Close]
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_OENGL (ATP synthase subunit a, chloroplastic OS=Oenothera glazioviana GN=atpI PE=3 SV=1)

HSP 1 Score: 374.015 bits (959), Expect = 3.867e-103
Identity = 186/215 (86.51%), Postives = 193/215 (89.77%), Query Frame = 3 
Query:    3 FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            FQVH QVLITSWVVIAILLGSA IAVRNPQT+P  +QNFFEY+LEFIRDVSKTQIGEEYGPWVPFIGT+FLFIFVSNWSGALLPWK++ELPHGELAAPTNDINTTVALALLTS+AYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:   33 FQVHGQVLITSWVVIAILLGSASIAVRNPQTIPNDSQNFFEYILEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKLVELPHGELAAPTNDINTTVALALLTSVAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPSVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247
[Close]
BLAST of CV713052 vs. ExPASy Swiss-Prot
Match: ATPI_OENEH (ATP synthase subunit a, chloroplastic OS=Oenothera elata subsp. hookeri GN=atpI PE=3 SV=2)

HSP 1 Score: 374.015 bits (959), Expect = 3.867e-103
Identity = 186/215 (86.51%), Postives = 193/215 (89.77%), Query Frame = 3 
Query:    3 FQVHAQVLITSWVVIAILLGSAFIAVRNPQTVPTATQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIGESMEGHH 647
            FQVH QVLITSWVVIAILLGSA IAVRNPQT+P  +QNFFEY+LEFIRDVSKTQIGEEYGPWVPFIGT+FLFIFVSNWSGALLPWK++ELPHGELAAPTNDINTTVALALLTS+AYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADE                  MFLGLFTSGIQALIFATLAAAYIGESMEGHH
Sbjct:   33 FQVHGQVLITSWVVIAILLGSASIAVRNPQTIPNDSQNFFEYILEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKLVELPHGELAAPTNDINTTVALALLTSVAYFYAGLSKKGLGYFSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPSVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH 247
The following BLAST results are available for this feature:
BLAST of CV713052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 365
Match NameE-valueIdentityDescription
ATPI_CITSI3.380e-10791.63ATP synthase subunit a, chloroplastic OS=Citrus si... [more]
ATPI_GOSHI9.205e-10588.84ATP synthase subunit a, chloroplastic OS=Gossypium... [more]
ATPI_MANES4.568e-10487.91ATP synthase subunit a, chloroplastic OS=Manihot e... [more]
ATPI_GOSBA4.568e-10488.37ATP synthase subunit a, chloroplastic OS=Gossypium... [more]
ATPI_CARPA7.792e-10488.32ATP synthase subunit a, chloroplastic OS=Carica pa... [more]
ATPI_POPTR2.961e-10387.44ATP synthase subunit a, chloroplastic OS=Populus t... [more]
ATPI_POPAL2.961e-10387.44ATP synthase subunit a, chloroplastic OS=Populus a... [more]
ATPI_OENPA3.867e-10386.51ATP synthase subunit a, chloroplastic OS=Oenothera... [more]
ATPI_OENGL3.867e-10386.51ATP synthase subunit a, chloroplastic OS=Oenothera... [more]
ATPI_OENEH3.867e-10386.51ATP synthase subunit a, chloroplastic OS=Oenothera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002E02_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713052 ID=CV713052; Name=CV713052; organism=Citrus sinensis; type=EST; length=672bp
GGTTCCAGGTCCATGCCCAAGTACTTATTACTTCTTGGGTTGTAATTGCT
ATCTTATTAGGTTCAGCCTTTATAGCCGTTCGGAATCCACAAACCGTTCC
GACTGCCACTCAAAATTTCTTCGAATATGTCCTTGAATTCATTCGAGACG
TGAGCAAAACTCAGATTGGAGAAGAATATGGCCCATGGGTTCCCTTTATT
GGAACTCTGTTTCTTTTTATTTTTGTTTCTAATTGGTCAGGTGCTCTTTT
ACCTTGGAAAATCATAGAGTTACCTCATGGGGAGTTAGCCGCACCCACGA
ATGATATAAATACTACCGTTGCTTTAGCTTTGCTCACGTCAATAGCATAC
TTCTATGCGGGTCTTTCCAAAAAGGGATTAGGCTATTTCAGTAAATACAT
TCAACCGACTCCAATTCTTTTACCCATTAACATTTTAGAAGATTTCACAA
AACCTCTATCACTTAGTTTTCGACTTTTTGGGAATATATTAGCCGATGAA
TTAGTAGTTGTTGTTCTTGTTTCTTTAGTACCTTTAGTGGTTCCTATACC
CGTCATGTTCCTTGGATTATTTACAAGCGGTATTCAAGCTCTTATTTTTG
CAACTTTAGCTGCGGCTTATATAGGCGAATCTATGGAGGGACATCATTGA
CTCGTTTTCGAAATAGTCTTTT
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