CV713027

Overview
NameCV713027
Unique NameCV713027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODBA_MOUSE (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.989e-56
Identity = 97/198 (48.99%), Postives = 136/198 (68.69%), Query Frame = -2
Query:  165 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 758
            SEGD HA  NF+A  E P+IF CRNNG+AISTP S+Q+R DG   +G  YG++SIRVDGND  A+Y+A   AR  A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W     P++R R+++ + GWW+ + E   R   RK+++ A ++AE+  KP  S LF+DVY   P+ LR Q+ SL   ++ + + YP
Sbjct:  239 SEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIKSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLLFSDVYQEMPAQLRRQQESLARHLQTYGEHYP 436          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODBA_PANTR (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.598e-56
Identity = 98/198 (49.49%), Postives = 135/198 (68.18%), Query Frame = -2
Query:  165 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 758
            SEGD HA  NF+A  E P+IF CRNNG+AISTP S+Q+R DG   +G  YG+ SIRVDGND  A+Y+A   AR  A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W     PV+R R ++ S GWW+ + E   R   RK+++ A ++AE+  KP  + LF+DVY   P+ LR+Q+ SL   ++ + + YP
Sbjct:  242 SEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPVSRLRHYLLSQGWWDEEQEKAWRKQSRKKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 439          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODBA_BOVIN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.393e-56
Identity = 97/198 (48.99%), Postives = 135/198 (68.18%), Query Frame = -2
Query:  165 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 758
            SEGD HA  NF+A  E P+IF CRNNG+AISTP S+Q+R DG   +G  YG+ SIRVDGND  A+Y+A   AR  A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W     P++R R  ++S GWW+ + E   R   RK+++ A ++AE+  KP  S +F+DVY   P+ LR+Q+ SL   ++ + + YP
Sbjct:  252 SEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGILSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHHLQSRGWWDDEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLIFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 449          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODBA_RAT (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.431e-56
Identity = 97/198 (48.99%), Postives = 135/198 (68.18%), Query Frame = -2
Query:  165 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 758
            SEGD HA  NF+A  E P+IF CRNNG+AISTP S+Q+R DG   +G  YG+ SIRVDGND  A+Y+A   AR  A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W     P++R R+++ + GWW+ + E   R   RK+++ A ++AE+  KP  S LF+DVY   P+ LR Q+ SL   ++ + + YP
Sbjct:  238 SEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLLFSDVYQEMPAQLRRQQESLARHLQTYGEHYP 435          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODBA_MACFA (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.431e-56
Identity = 97/198 (48.99%), Postives = 135/198 (68.18%), Query Frame = -2
Query:  165 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 758
            SEGD HA  NF+A  E P+IF CRNNG+AISTP S+Q+R DG   +G  YG+ SIRVDGND  A+Y+A   AR  A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W     P++R R ++ S GWW+ + E   R   RK+++ A ++AE+  KP  + LF+DVY   P+ LR+Q+ SL   ++ + + YP
Sbjct:  242 SEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRKKVMKAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 439          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODBA_HUMAN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 7.558e-56
Identity = 96/198 (48.48%), Postives = 135/198 (68.18%), Query Frame = -2
Query:  165 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 758
            SEGD HA  NF+A  E P+IF CRNNG+AISTP S+Q+R DG   +G  YG+ SIRVDGND  A+Y+A   AR  A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W     P++R R ++ S GWW+ + E   R   R++++ A ++AE+  KP  + LF+DVY   P+ LR+Q+ SL   ++ + + YP
Sbjct:  242 SEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 439          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODBA_DICDI (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.398e-55
Identity = 99/201 (49.25%), Postives = 138/201 (68.66%), Query Frame = -2
Query:  159 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKG-RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSN 758
            SEGDFHAA+NF+A    P IF CRNN WAISTP  +Q++ DG   +G   YG+++IRVDGND  A+Y+    AR++A+ E  P+LIEA+TYRVGHH+TSDDS++YR V+EI  W+  ++P++R R ++   GWW+   E E  ++ R  +  +L  AEK  KP I+++FTDVYD    NL EQ+  L E +K +P +YP N
Sbjct:  230 SEGDFHAAMNFAAALSTPTIFFCRNNKWAISTPSKEQYKGDGIAGRGPNGYGMKTIRVDGNDIWAVYNVTKLARKIAVEEQVPVLIEAMTYRVGHHSTSDDSSRYRTVEEINAWKEGKNPISRLRNYMNHKGWWSDAQEKETIANARTTVRESLVNAEKQYKPSINEIFTDVYDKPTPNLIEQQKELIEHLKLYPDEYPLN 430          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPA_STAAW (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MW2) GN=pdhA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.017e-37
Identity = 82/193 (42.49%), Postives = 115/193 (59.59%), Query Frame = -2
Query:  183 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT-TSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKK 758
            S+GDF+  +NF+A  +AP IF+ +NN +AISTP S Q  ++    K  A G+  I+VDG DALA+Y A   AR+ A+    P LIE +TYR G HT   DD T+YR  DE   W   +DP+ RFRK++E+ G WN D E+E+    +  I  A++EA+  EK  ++ L   +Y+  P NL EQ    +E   K
Sbjct:  179 SQGDFYEGINFAAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDEDAEWE-KKDPLVRFRKFLENKGLWNEDKENEVIERAKADIKAAIKEADNTEKQTVTSLMEIMYEDMPQNLAEQYEIYKEKESK 370          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPA_STAAS (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MSSA476) GN=pdhA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.017e-37
Identity = 82/193 (42.49%), Postives = 115/193 (59.59%), Query Frame = -2
Query:  183 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT-TSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKK 758
            S+GDF+  +NF+A  +AP IF+ +NN +AISTP S Q  ++    K  A G+  I+VDG DALA+Y A   AR+ A+    P LIE +TYR G HT   DD T+YR  DE   W   +DP+ RFRK++E+ G WN D E+E+    +  I  A++EA+  EK  ++ L   +Y+  P NL EQ    +E   K
Sbjct:  179 SQGDFYEGINFAAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDEDAEWE-KKDPLVRFRKFLENKGLWNEDKENEVIERAKADIKAAIKEADNTEKQTVTSLMEIMYEDMPQNLAEQYEIYKEKESK 370          
BLAST of CV713027 vs. ExPASy Swiss-Prot
Match: ODPA_STAAR (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MRSA252) GN=pdhA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.017e-37
Identity = 82/193 (42.49%), Postives = 115/193 (59.59%), Query Frame = -2
Query:  183 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT-TSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKK 758
            S+GDF+  +NF+A  +AP IF+ +NN +AISTP S Q  ++    K  A G+  I+VDG DALA+Y A   AR+ A+    P LIE +TYR G HT   DD T+YR  DE   W   +DP+ RFRK++E+ G WN D E+E+    +  I  A++EA+  EK  ++ L   +Y+  P NL EQ    +E   K
Sbjct:  179 SQGDFYEGINFAAAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDEDAEWE-KKDPLVRFRKFLENKGLWNEDKENEVIERAKADIKAAIKEADNTEKQTVTSLMEIMYEDMPQNLAEQYEIYKEKESK 370          
The following BLAST results are available for this feature:
BLAST of CV713027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ODBA_MOUSE1.989e-5648.992-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_PANTR2.598e-5649.492-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_BOVIN3.393e-5648.992-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_RAT4.431e-5648.992-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MACFA4.431e-5648.992-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_HUMAN7.558e-5648.482-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_DICDI6.398e-5549.252-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODPA_STAAW6.017e-3742.49Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAS6.017e-3742.49Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAR6.017e-3742.49Pyruvate dehydrogenase E1 component subunit alpha ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0002D13_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002D13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713027 ID=CV713027; Name=CV713027; organism=Citrus sinensis; type=EST; length=759bp
ATCCCCCCGGGCTGCAGGTTTTTTTTATTGCTTTTAACTACACTTGATTT
ATTAAACCAAATGTACTCAAAGATCAAAAGTACAAATTTCACAGAGATAA
ATGTTTGCTATGTGCAGTTGCACTTAATCAGTAGACACTTACTAAACTAA
ATAGGAACATTTGAGGGATAGTCTTGTGGGTGCTTTTTGATGGTCTCTCT
TAATGAGTGCTCTTGCTCGCGGAGGTTAGAAGGAGAAACATCATATACAT
CGGTAAACAAGTCTGAAATTGGAGGTTTCTCTGCTTTTTCGGCTTCTTGA
AGTGCATGTAATATCTGCTTCCTCACACTGCTTCTGAGCTCTGACTCAAT
GTCACCATTCCACCAACCATTGCTTTCTATCCACTTTCTAAATCTCGTAA
CAGGGTCTTGAGTTGTTCTCCACCATTCAATCTCATCAACTGGGCGGTAC
TTAGTGGAATCATCTGATGTCGTGTGGTGTCCTACTCGATATGTAAGAGC
CTCAATTAAGATAGGTCTGCCCTCACCAATCGCCATTTCACGTGCAGCAT
GAACTGCACTATATATGGCAAGAGCATCGTTACCATCTACACGGATACTT
CGGACTCCATATGCCCGGCCTTTAACAACGGCACCATCACTTCGAAACTG
GTCAGAAATAGGGGTACTGATAGCCCATCCATTGTTCCTACAGATAAAAA
TAACTGGGGCCTCCGTAACTGCCGAAAAATTTAAAGCAGCATGGAAATCT
CCCTCACTT
back to top