CV713022 | Citrus Genome Database

Overview


Name	CV713022
Unique Name	CV713022
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	858

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CV713022 vs. ExPASy Swiss-Prot
Match: ZN143_XENTR (Zinc finger protein 143 OS=Xenopus tropicalis GN=znf143 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.808e-19
Identity = 51/147 (34.69%), Postives = 77/147 (52.38%), Query Frame = -3

Query:  242 GKDAANTSEVDIREIAEKRATKTMRNRESVPA-PCQDKKKILKGHHRCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSF 658
            G + A ++ +     +EK+    + +   +PA P Q  +K      RCD +GC   + T   L +H+R+       +C H GC K F++      H R H  E+P +C  + C+ SFK +    +H+R HTGERP+KC FEGCG SF
Sbjct:  189 GGEGAGSNALINESESEKKMQIVLSHGSRIPAKPPQTNEKAF----RCDYEGCGKLYTTAHHLKVHERSHTGDRPYQCDHGGCRKAFATGYGLKSHVRTHTGEKPYRCSEENCTKSFKTSGDLQKHVRTHTGERPFKCPFEGCGRSF 331

HSP 2 Score: 92.8189 bits (229), Expect = 2.611e-18
Identity = 47/113 (41.59%), Postives = 57/113 (50.44%), Query Frame = -3

Query:  209 HRCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 526
            ++CD  GCR +F T   L  H R        RC  E C K F +      H R H  ERP KCP++GC  SF  +  R  HIR HTGERPY C   GCG +F   ++   H R
Sbjct:  260 YQCDHGGCRKAFATGYGLKSHVRTHTGEKPYRCSEENCTKSFKTSGDLQKHVRTHTGERPFKCPFEGCGRSFTTSNIRKVHIRTHTGERPYYCSEPGCGRAFASATNYKNHVR 372

HSP 3 Score: 89.3521 bits (220), Expect = 2.886e-17
Identity = 45/132 (34.09%), Postives = 63/132 (47.73%), Query Frame = -3

Query:  152 HRCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGHYENLSA*RYPVNYAG 526
            +RC  + C  SF+T  +L  H R        +CP EGCG+ F++     +H R H  ERP  C   GC  +F  A     H+R+HTGE+PY C   GC   F   S + +H     H  +  +  Y  N+ G
Sbjct:  290 YRCSEENCTKSFKTSGDLQKHVRTHTGERPFKCPFEGCGRSFTTSNIRKVHIRTHTGERPYYCSEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKH-----HVVHTHSKPYNCNHCG 416

HSP 4 Score: 82.8037 bits (203), Expect = 2.702e-15
Identity = 33/85 (38.82%), Postives = 50/85 (58.82%), Query Frame = -3

Query:  209 KRNRCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 463
            K  RC +EGCGK +++  +  +H+R H  +RP +C   GC  +F   +    H+R HTGE+PY+C  E C  SF+   D+ +H R
Sbjct:  228 KAFRCDYEGCGKLYTTAHHLKVHERSHTGDRPYQCDHGGCRKAFATGYGLKSHVRTHTGEKPYRCSEENCTKSFKTSGDLQKHVR 312

[Close]

BLAST of CV713022 vs. ExPASy Swiss-Prot
Match: ZN143_HUMAN (Zinc finger protein 143 OS=Homo sapiens GN=ZNF143 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.084e-19
Identity = 44/101 (43.56%), Postives = 58/101 (57.43%), Query Frame = -3

Query:  242 RCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSF 523
            RC+ DGC   + T   L +H+R+       +C H GCGK F++      H R H  E+P +C    C+ SFK +    +HIR HTGERP+KC FEGCG SF
Sbjct:  238 RCEYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHAGCGKAFATGYGLKSHVRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPFEGCGRSF 338

HSP 2 Score: 90.8929 bits (224), Expect = 9.921e-18
Identity = 46/132 (34.85%), Postives = 63/132 (47.73%), Query Frame = -3

Query:  152 HRCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGHYENLSA*RYPVNYAG 526
            +RC  D C  SF+T  +L  H R        +CP EGCG+ F++     +H R H  ERP  C   GC  +F  A     H+R+HTGE+PY C   GC   F   S + +H     H  +  +  Y  N+ G
Sbjct:  297 YRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPFEGCGRSFTTSNIRKVHVRTHTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKH-----HVVHTHSKPYNCNHCG 423

HSP 3 Score: 85.8853 bits (211), Expect = 3.191e-16
Identity = 43/113 (38.05%), Postives = 56/113 (49.56%), Query Frame = -3

Query:  209 HRCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 526
            ++C+  GC  +F T   L  H R        RC  + C K F +      H R H  ERP KCP++GC  SF  +  R  H+R HTGERPY C   GCG +F   ++   H R
Sbjct:  267 YQCEHAGCGKAFATGYGLKSHVRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPFEGCGRSFTTSNIRKVHVRTHTGERPYYCTEPGCGRAFASATNYKNHVR 379

HSP 4 Score: 83.5741 bits (205), Expect = 1.584e-15
Identity = 35/102 (34.31%), Postives = 55/102 (53.92%), Query Frame = -3

Query:  209 LDGCRMSFETKRELSLHKRNRCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 514
            L G       K + S  K  RC ++GCGK +++  +  +H+R H  +RP +C   GC  +F   +    H+R HTGE+PY+C  + C  SF+   D+ +H R
Sbjct:  218 LQGHATRVTAKSQQSGEKAFRCEYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHAGCGKAFATGYGLKSHVRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIR 319

[Close]

BLAST of CV713022 vs. ExPASy Swiss-Prot
Match: ZN143_BOVIN (Zinc finger protein 143 OS=Bos taurus GN=ZNF143 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.870e-19
Identity = 44/101 (43.56%), Postives = 57/101 (56.44%), Query Frame = -3

Query:  242 RCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSF 523
            RC  DGC   + T   L +H+R+       +C H GCGK F++      H R H  E+P +C    C+ SFK +    +HIR HTGERP+KC FEGCG SF
Sbjct:  213 RCGYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHAGCGKAFATGYGLKSHVRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCHFEGCGRSF 313

HSP 2 Score: 87.0409 bits (214), Expect = 1.433e-16
Identity = 45/132 (34.09%), Postives = 62/132 (46.97%), Query Frame = -3

Query:  152 HRCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGHYENLSA*RYPVNYAG 526
            +RC  D C  SF+T  +L  H R        +C  EGCG+ F++     +H R H  ERP  C   GC  +F  A     H+R+HTGE+PY C   GC   F   S + +H     H  +  +  Y  N+ G
Sbjct:  272 YRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCHFEGCGRSFTTSNIRKVHIRTHTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKH-----HVVHTHSKPYNCNHCG 398

HSP 3 Score: 83.1889 bits (204), Expect = 2.069e-15
Identity = 35/102 (34.31%), Postives = 55/102 (53.92%), Query Frame = -3

Query:  209 LDGCRMSFETKRELSLHKRNRCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 514
            L G       K + S  K  RC ++GCGK +++  +  +H+R H  +RP +C   GC  +F   +    H+R HTGE+PY+C  + C  SF+   D+ +H R
Sbjct:  193 LQGHATRVTAKSQQSGEKAFRCGYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHAGCGKAFATGYGLKSHVRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIR 294

HSP 4 Score: 82.8037 bits (203), Expect = 2.702e-15
Identity = 43/113 (38.05%), Postives = 55/113 (48.67%), Query Frame = -3

Query:  209 HRCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 526
            ++C+  GC  +F T   L  H R        RC  + C K F +      H R H  ERP KC ++GC  SF  +  R  HIR HTGERPY C   GCG +F   ++   H R
Sbjct:  242 YQCEHAGCGKAFATGYGLKSHVRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCHFEGCGRSFTTSNIRKVHIRTHTGERPYYCTEPGCGRAFASATNYKNHVR 354

[Close]

BLAST of CV713022 vs. ExPASy Swiss-Prot
Match: ZN143_RAT (Zinc finger protein 143 OS=Rattus norvegicus GN=Znf143 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.410e-18
Identity = 43/101 (42.57%), Postives = 56/101 (55.45%), Query Frame = -3

Query:  242 RCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSF 523
            RC  DGC   + T   L +H+R+       +C H GCGK F++      H R H  E+P +C    C+ SFK +    +HIR HTGERP+KC  EGCG SF
Sbjct:  238 RCKYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHSGCGKAFATGYGLKSHFRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPIEGCGRSF 338

HSP 2 Score: 89.7373 bits (221), Expect = 2.210e-17
Identity = 46/132 (34.85%), Postives = 63/132 (47.73%), Query Frame = -3

Query:  152 HRCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGHYENLSA*RYPVNYAG 526
            +RC  D C  SF+T  +L  H R        +CP EGCG+ F++     +H R H  ERP  C   GC  +F  A     H+R+HTGE+PY C   GC   F   S + +H     H  +  +  Y  N+ G
Sbjct:  297 YRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPIEGCGRSFTTSNIRKVHIRTHTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKH-----HVVHTHSKPYNCNHCG 423

HSP 3 Score: 85.1149 bits (209), Expect = 5.444e-16
Identity = 44/113 (38.94%), Postives = 55/113 (48.67%), Query Frame = -3

Query:  209 HRCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 526
            ++C+  GC  +F T   L  H R        RC  + C K F +      H R H  ERP KCP +GC  SF  +  R  HIR HTGERPY C   GCG +F   ++   H R
Sbjct:  267 YQCEHSGCGKAFATGYGLKSHFRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPIEGCGRSFTTSNIRKVHIRTHTGERPYYCTEPGCGRAFASATNYKNHVR 379

HSP 4 Score: 82.4185 bits (202), Expect = 3.528e-15
Identity = 35/102 (34.31%), Postives = 54/102 (52.94%), Query Frame = -3

Query:  209 LDGCRMSFETKRELSLHKRNRCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 514
            L G       K + S  K  RC ++GCGK +++  +  +H+R H  +RP +C   GC  +F   +    H R HTGE+PY+C  + C  SF+   D+ +H R
Sbjct:  218 LQGHATRVTPKSQQSGEKAFRCKYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHSGCGKAFATGYGLKSHFRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIR 319

[Close]

BLAST of CV713022 vs. ExPASy Swiss-Prot
Match: ZN143_MOUSE (Zinc finger protein 143 OS=Mus musculus GN=Znf143 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.410e-18
Identity = 43/101 (42.57%), Postives = 56/101 (55.45%), Query Frame = -3

Query:  242 RCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSF 523
            RC  DGC   + T   L +H+R+       +C H GCGK F++      H R H  E+P +C    C+ SFK +    +HIR HTGERP+KC  EGCG SF
Sbjct:  238 RCKYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHSGCGKAFATGYGLKSHFRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPIEGCGRSF 338

HSP 2 Score: 89.7373 bits (221), Expect = 2.210e-17
Identity = 46/132 (34.85%), Postives = 63/132 (47.73%), Query Frame = -3

Query:  152 HRCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGHYENLSA*RYPVNYAG 526
            +RC  D C  SF+T  +L  H R        +CP EGCG+ F++     +H R H  ERP  C   GC  +F  A     H+R+HTGE+PY C   GC   F   S + +H     H  +  +  Y  N+ G
Sbjct:  297 YRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPIEGCGRSFTTSNIRKVHIRTHTGERPYYCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKH-----HVVHTHSKPYNCNHCG 423

HSP 3 Score: 85.1149 bits (209), Expect = 5.444e-16
Identity = 44/113 (38.94%), Postives = 55/113 (48.67%), Query Frame = -3

Query:  209 HRCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 526
            ++C+  GC  +F T   L  H R        RC  + C K F +      H R H  ERP KCP +GC  SF  +  R  HIR HTGERPY C   GCG +F   ++   H R
Sbjct:  267 YQCEHSGCGKAFATGYGLKSHFRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPIEGCGRSFTTSNIRKVHIRTHTGERPYYCTEPGCGRAFASATNYKNHVR 379

HSP 4 Score: 82.4185 bits (202), Expect = 3.528e-15
Identity = 35/102 (34.31%), Postives = 54/102 (52.94%), Query Frame = -3

Query:  209 LDGCRMSFETKRELSLHKRNRCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 514
            L G       K + S  K  RC ++GCGK +++  +  +H+R H  +RP +C   GC  +F   +    H R HTGE+PY+C  + C  SF+   D+ +H R
Sbjct:  218 LQGHATRVTPKSQQSGEKAFRCKYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHSGCGKAFATGYGLKSHFRTHTGEKPYRCSEDNCTKSFKTSGDLQKHIR 319

[Close]

BLAST of CV713022 vs. ExPASy Swiss-Prot
Match: ZN143_XENLA (Zinc finger protein 143 OS=Xenopus laevis GN=znf143 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.921e-18
Identity = 47/146 (32.19%), Postives = 73/146 (50.00%), Query Frame = -3

Query:  242 GKDAANTSEVDIREIAEKRATKTMRNRESVPAPCQDKKKILKGHHRCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSF 658
            G + A ++ +     +EK+    + +   +P   Q   +      RCD +GC   + T   L +H+R+       +C H  C K F++      H R H  E+P +C  + C+ SFK +    +H+R HTGERP+KC FEGCG SF
Sbjct:  189 GGEGAGSNALINESESEKKMQIVLSHGARLPIKAQQTNEKA---FRCDYEGCGKLYTTAHHLKVHERSHTGDRPYQCDHGSCRKAFATGYGLKSHVRTHTGEKPYRCSEENCTKSFKTSGDLQKHVRTHTGERPFKCPFEGCGRSF 331

HSP 2 Score: 90.5077 bits (223), Expect = 1.296e-17
Identity = 46/113 (40.71%), Postives = 56/113 (49.56%), Query Frame = -3

Query:  209 HRCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 526
            ++CD   CR +F T   L  H R        RC  E C K F +      H R H  ERP KCP++GC  SF  +  R  HIR HTGERPY C   GCG +F   ++   H R
Sbjct:  260 YQCDHGSCRKAFATGYGLKSHVRTHTGEKPYRCSEENCTKSFKTSGDLQKHVRTHTGERPFKCPFEGCGRSFTTSNIRKVHIRTHTGERPYYCSEPGCGRAFASATNYKNHVR 372

HSP 3 Score: 89.3521 bits (220), Expect = 2.886e-17
Identity = 45/132 (34.09%), Postives = 63/132 (47.73%), Query Frame = -3

Query:  152 HRCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGHYENLSA*RYPVNYAG 526
            +RC  + C  SF+T  +L  H R        +CP EGCG+ F++     +H R H  ERP  C   GC  +F  A     H+R+HTGE+PY C   GC   F   S + +H     H  +  +  Y  N+ G
Sbjct:  290 YRCSEENCTKSFKTSGDLQKHVRTHTGERPFKCPFEGCGRSFTTSNIRKVHIRTHTGERPYYCSEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSSLYKH-----HVVHTHSKPYNCNHCG 416

HSP 4 Score: 81.2629 bits (199), Expect = 7.861e-15
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = -3

Query:  209 KRELSLHKRNRCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 484
            K + +  K  RC +EGCGK +++  +  +H+R H  +RP +C    C  +F   +    H+R HTGE+PY+C  E C  SF+   D+ +H R
Sbjct:  221 KAQQTNEKAFRCDYEGCGKLYTTAHHLKVHERSHTGDRPYQCDHGSCRKAFATGYGLKSHVRTHTGEKPYRCSEENCTKSFKTSGDLQKHVR 312

[Close]

BLAST of CV713022 vs. ExPASy Swiss-Prot
Match: ZN410_BOVIN (Zinc finger protein 410 OS=Bos taurus GN=ZNF410 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.210e-17
Identity = 45/129 (34.88%), Postives = 66/129 (51.16%), Query Frame = -3

Query:  215 RESVPAPCQDKKKILKGHHRCDLDGCRMSF----ETKRELSLHKRNR---CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRH 580
            ++S P P  +KK       +C ++GC  +F      K  L  H+ +R   CP  GCGK F   +   +H R H+ E+P  CP   C   F  A     H+R+HTGE+P+ C+ +GCG SF   S + +H
Sbjct:  207 KDSGPLPQMEKKL------KCTVEGCDRTFVWPAHFKYHLKTHRNDRSFICPAAGCGKSFYVLQRLKVHMRTHNGEKPFVCPESNCGKQFTTAGNLKNHLRIHTGEKPFLCEAQGCGRSFAEYSSLRKH 329

HSP 2 Score: 70.8626 bits (172), Expect = 1.062e-11
Identity = 37/112 (33.04%), Postives = 55/112 (49.11%), Query Frame = -3

Query:  206 CDLDGCRMSFETKRELSLHKRNR-------CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRK 520
            C   GC  SF   + L +H R         CP   CGK+F++      H R+H  E+P  C  +GC  SF    +  +H+ VH+GE+P++C+   CG +F      + H RK
Sbjct:  251 CPAAGCGKSFYVLQRLKVHMRTHNGEKPFVCPESNCGKQFTTAGNLKNHLRIHTGEKPFLCEAQGCGRSFAEYSSLRKHLVVHSGEKPHQCQV--CGKTFSQSGSRNVHMRK 360

[Close]

BLAST of CV713022 vs. ExPASy Swiss-Prot
Match: ZN410_HUMAN (Zinc finger protein 410 OS=Homo sapiens GN=ZNF410 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.886e-17
Identity = 46/131 (35.11%), Postives = 68/131 (51.91%), Query Frame = -3

Query:  215 RNRESVPAPCQDKKKILKGHHRCDLDGCRMSF----ETKRELSLHKRNR---CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRH 586
            ++++S P P  +KK       +C ++GC  +F      K  L  H+ +R   CP EGCGK F   +   +H R H+ E+P  C   GC   F  A     H R+HTGE+P+ C+ +GCG SF   S + +H
Sbjct:  205 QSKDSGPLPQVEKKL------KCTVEGCDRTFVWPAHFKYHLKTHRNDRSFICPAEGCGKSFYVLQRLKVHMRTHNGEKPFMCHESGCGKQFTTAGNLKNHRRIHTGEKPFLCEAQGCGRSFAEYSSLRKH 329

HSP 2 Score: 73.1738 bits (178), Expect = 2.141e-12
Identity = 40/121 (33.06%), Postives = 61/121 (50.41%), Query Frame = -3

Query:  179 CDLDGCRMSFETKRELSLHKRNR-------CPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRRKTGHYENLSA 520
            C  +GC  SF   + L +H R         C   GCGK+F++      H+R+H  E+P  C  +GC  SF    +  +H+ VH+GE+P++C+   CG +F      + H RK  H+  L A
Sbjct:  251 CPAEGCGKSFYVLQRLKVHMRTHNGEKPFMCHESGCGKQFTTAGNLKNHRRIHTGEKPFLCEAQGCGRSFAEYSSLRKHLVVHSGEKPHQCQV--CGKTFSQSGSRNVHMRK--HHLQLGA 367

[Close]

BLAST of CV713022 vs. ExPASy Swiss-Prot
Match: ZNF76_RAT (Zinc finger protein 76 OS=Rattus norvegicus GN=Znf76 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.770e-17
Identity = 41/111 (36.94%), Postives = 56/111 (50.45%), Query Frame = -3

Query:  215 HRCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRH 526
            ++C  + C  +F+T  +L  H R        RCP EGCG+ F++     +H R H  ERP  CP   C   F  A     H+R+HTGE+PY C   GCG  F   S + +H
Sbjct:  225 YKCPEELCSKAFKTSGDLQKHVRTHTGERPFRCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPEPHCGRGFTSATNYKNHVRIHTGEKPYVCTVPGCGKRFTEYSSLYKH 335

HSP 2 Score: 88.5817 bits (218), Expect = 4.924e-17
Identity = 42/101 (41.58%), Postives = 55/101 (54.46%), Query Frame = -3

Query:  242 RCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSF 523
            RC   GC   + T   L +H+R        RC    CGK F++      H R H  E+P KCP + CS +FK +    +H+R HTGERP++C FEGCG SF
Sbjct:  166 RCGYKGCGRLYTTAHHLKVHERAHTGDRSYRCDFPSCGKAFATGYGLKSHVRTHTGEKPYKCPEELCSKAFKTSGDLQKHVRTHTGERPFRCPFEGCGRSF 266

HSP 3 Score: 86.6557 bits (213), Expect = 1.871e-16
Identity = 43/113 (38.05%), Postives = 54/113 (47.79%), Query Frame = -3

Query:  209 HRCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 526
            +RCD   C  +F T   L  H R        +CP E C K F +      H R H  ERP +CP++GC  SF  +  R  H+R HTGERPY C    CG  F   ++   H R
Sbjct:  195 YRCDFPSCGKAFATGYGLKSHVRTHTGEKPYKCPEELCSKAFKTSGDLQKHVRTHTGERPFRCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPEPHCGRGFTSATNYKNHVR 307

HSP 4 Score: 75.8702 bits (185), Expect = 3.302e-13
Identity = 28/82 (34.15%), Postives = 48/82 (58.54%), Query Frame = -3

Query:  209 RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 454
            RC ++GCG+ +++  +  +H+R H  +R  +C +  C  +F   +    H+R HTGE+PYKC  E C  +F+   D+ +H R
Sbjct:  166 RCGYKGCGRLYTTAHHLKVHERAHTGDRSYRCDFPSCGKAFATGYGLKSHVRTHTGEKPYKCPEELCSKAFKTSGDLQKHVR 247

[Close]

BLAST of CV713022 vs. ExPASy Swiss-Prot
Match: ZNF76_MOUSE (Zinc finger protein 76 OS=Mus musculus GN=Znf76 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.770e-17
Identity = 41/111 (36.94%), Postives = 56/111 (50.45%), Query Frame = -3

Query:  215 HRCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRH 526
            ++C  + C  +F+T  +L  H R        RCP EGCG+ F++     +H R H  ERP  CP   C   F  A     H+R+HTGE+PY C   GCG  F   S + +H
Sbjct:  225 YKCPEELCSKAFKTSGDLQKHVRTHTGERPFRCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPEPHCGRGFTSATNYKNHVRIHTGEKPYVCTVPGCGKRFTEYSSLYKH 335

HSP 2 Score: 88.5817 bits (218), Expect = 4.924e-17
Identity = 42/101 (41.58%), Postives = 55/101 (54.46%), Query Frame = -3

Query:  242 RCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSF 523
            RC   GC   + T   L +H+R        RC    CGK F++      H R H  E+P KCP + CS +FK +    +H+R HTGERP++C FEGCG SF
Sbjct:  166 RCGYKGCGRLYTTAHHLKVHERAHTGDRPYRCDFPSCGKAFATGYGLKSHVRTHTGEKPYKCPEELCSKAFKTSGDLQKHVRTHTGERPFRCPFEGCGRSF 266

HSP 3 Score: 86.6557 bits (213), Expect = 1.871e-16
Identity = 43/113 (38.05%), Postives = 54/113 (47.79%), Query Frame = -3

Query:  209 HRCDLDGCRMSFETKRELSLHKRN-------RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 526
            +RCD   C  +F T   L  H R        +CP E C K F +      H R H  ERP +CP++GC  SF  +  R  H+R HTGERPY C    CG  F   ++   H R
Sbjct:  195 YRCDFPSCGKAFATGYGLKSHVRTHTGEKPYKCPEELCSKAFKTSGDLQKHVRTHTGERPFRCPFEGCGRSFTTSNIRKVHVRTHTGERPYTCPEPHCGRGFTSATNYKNHVR 307

HSP 4 Score: 78.9518 bits (193), Expect = 3.901e-14
Identity = 29/82 (35.37%), Postives = 49/82 (59.76%), Query Frame = -3

Query:  209 RCPHEGCGKRFSSHKYAIIHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGERPYKCKFEGCGLSFRFVSDISRHRR 454
            RC ++GCG+ +++  +  +H+R H  +RP +C +  C  +F   +    H+R HTGE+PYKC  E C  +F+   D+ +H R
Sbjct:  166 RCGYKGCGRLYTTAHHLKVHERAHTGDRPYRCDFPSCGKAFATGYGLKSHVRTHTGEKPYKCPEELCSKAFKTSGDLQKHVR 247

The following BLAST results are available for this feature:

BLAST of CV713022 vs. ExPASy Swiss-Prot

BLAST of CV713022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423


Match Name	E-value	Identity	Description
ZN143_XENTR	1.808e-19	34.69	Zinc finger protein 143 OS=Xenopus tropicalis GN=z...	[more]
ZN143_HUMAN	3.084e-19	43.56	Zinc finger protein 143 OS=Homo sapiens GN=ZNF143 ...	[more]
ZN143_BOVIN	6.870e-19	43.56	Zinc finger protein 143 OS=Bos taurus GN=ZNF143 PE...	[more]
ZN143_RAT	3.410e-18	42.57	Zinc finger protein 143 OS=Rattus norvegicus GN=Zn...	[more]
ZN143_MOUSE	3.410e-18	42.57	Zinc finger protein 143 OS=Mus musculus GN=Znf143 ...	[more]
ZN143_XENLA	9.921e-18	32.19	Zinc finger protein 143 OS=Xenopus laevis GN=znf14...	[more]
ZN410_BOVIN	2.210e-17	34.88	Zinc finger protein 410 OS=Bos taurus GN=ZNF410 PE...	[more]
ZN410_HUMAN	2.886e-17	35.11	Zinc finger protein 410 OS=Homo sapiens GN=ZNF410 ...	[more]
ZNF76_RAT	3.770e-17	36.94	Zinc finger protein 76 OS=Rattus norvegicus GN=Znf...	[more]
ZNF76_MOUSE	3.770e-17	36.94	Zinc finger protein 76 OS=Mus musculus GN=Znf76 PE...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_0002D11_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002D11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV713022 ID=CV713022; Name=CV713022; organism=Citrus sinensis; type=EST; length=858bp
TTTTTTTTTTTTTTTTTAATTTGAAGAATGCGGCCTAACCCCTAAACTAT
ATTTAAGAAACAACACTCAAAAAGAGTTCTGTATATAGTACATGATTCTG
CATGCCTCTTTGGCCCCAGAATCTTCATTTCCCGTGGCCATATTTTACAA
TACCAGCGTAATTTACAGGATATCTTCAGGCAGATAAGTTTTCATAATGC
CCTGTTTTCCGTCTATGTCGACTAATATCAGATACAAACCTGAAAGAAAG
GCCACAACCCTCAAACTTGCATTTGTATGGCCGCTCGCCTGTGTGCACCC
GTATATGCTCAGTCCTAGCCCAAGCCCACTTGAATGACATAGAGCAACCT
TTCCATGGGCACTTGAGCGGCCTCTCATCATCATGAACACGCTGATGAAT
TATTGCATATTTGTGGGAGCTAAACCTCTTCCCACACCCTTCGTGCGGGC
AGCGGTTGCGTTTGTGCAAGGATAGTTCTCTCTTCGTCTCAAAACTCATG
CGGCAGCCATCTAGATCACACCTGTGATGCCCCTTTAAGATCTTTTTCTT
ATCCTGGCAAGGAGCTGGAACACTTTCACGGTTTCTCATTGTCTTTGTTG
CGCGCTTCTCAGCAATCTCTCTGATGTCAACTTCACTTGTATTAGCTGCA
TCTTTCCCAGCCCGTGGCCTCAATCCTTCACAAGGACTCCTGATAAACCC
ACTGCCATTAAACTTGTTTTCTGTCAACCGCTCCAATTCTCTATTCCTTT
TTCTTCCTTTTCCAGCGCTAAAGCTGGGATCTTCCAAATTGGACTCATTG
CATTCCCTCTCTTTGTTGTCTTTTGATGAATATGCTTCATTGCCATTGCA
AAATTTTT