CV713021

Overview
NameCV713021
Unique NameCV713021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2103 contig Csv1_Contig2103:444..1131. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV713021 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.679e-56
Identity = 105/128 (82.03%), Postives = 114/128 (89.06%), Query Frame = -2
Query:  304 VFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 687
            VFLKVNKAT+NML RVEPYVTYGYPNLKSV+ELIYKRGYGKL+ QRIALTDNSI+++ALGK GIIC+EDLIHEIMTVGPHFKEANNFLWPF           KRNHYVEGGDAGNREN+INEL+RRMN
Sbjct:  115 VFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRMN 242          
BLAST of CV713021 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.193e-56
Identity = 106/128 (82.81%), Postives = 113/128 (88.28%), Query Frame = -2
Query:  304 VFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 687
            VFLKVNKATMNML RVEPYVTYG+PNLKSV+ELIYKRGYGKL+ QRIALTDNSI+E+ALGK GIIC EDLIHEI+TVGPHFKEANNFLWPF           KRNHYVEGGDAGNREN+INELIRRMN
Sbjct:  115 VFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN 242          
BLAST of CV713021 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.401e-55
Identity = 102/128 (79.69%), Postives = 112/128 (87.50%), Query Frame = -2
Query:  304 VFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 687
            VFLKVNKAT+NML RVEPYVTYGYPNLKSV+ELIYKRG+GKL+ QR ALTDNSI+++ LGK GIIC+EDLIHEIMTVGPHFKEANNFLWPF           KRNHYVEGGDAGNREN+INEL+RRMN
Sbjct:  117 VFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRMN 244          
BLAST of CV713021 vs. ExPASy Swiss-Prot
Match: RL7_MOUSE (60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 4.145e-47
Identity = 90/127 (70.87%), Postives = 104/127 (81.89%), Query Frame = -2
Query:  304 FLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 684
            F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDNS+I ++LGKFGIICMEDLIHEI TVG  FKEANNFLWPF           K  H+VEGGDAGNRE+ IN LIRRMN
Sbjct:  144 FVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 270          
BLAST of CV713021 vs. ExPASy Swiss-Prot
Match: RL7_RAT (60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 5.414e-47
Identity = 89/127 (70.08%), Postives = 104/127 (81.89%), Query Frame = -2
Query:  304 FLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 684
            F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDNS++ ++LGKFGIICMEDLIHEI TVG  FKEANNFLWPF           K  H+VEGGDAGNRE+ IN LIRRMN
Sbjct:  134 FVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 260          
BLAST of CV713021 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.057e-46
Identity = 88/127 (69.29%), Postives = 104/127 (81.89%), Query Frame = -2
Query:  304 FLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 684
            F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDN++I ++LGK+GIICMEDLIHEI TVG  FKEANNFLWPF           K  H+VEGGDAGNRE+ IN LIRRMN
Sbjct:  121 FVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 247          
BLAST of CV713021 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.057e-46
Identity = 88/127 (69.29%), Postives = 104/127 (81.89%), Query Frame = -2
Query:  304 FLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 684
            F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDN++I ++LGK+GIICMEDLIHEI TVG  FKEANNFLWPF           K  H+VEGGDAGNRE+ IN LIRRMN
Sbjct:  121 FVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEICTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 247          
BLAST of CV713021 vs. ExPASy Swiss-Prot
Match: RL7_HUMAN (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.057e-46
Identity = 88/127 (69.29%), Postives = 104/127 (81.89%), Query Frame = -2
Query:  304 FLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 684
            F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDN++I ++LGK+GIICMEDLIHEI TVG  FKEANNFLWPF           K  H+VEGGDAGNRE+ IN LIRRMN
Sbjct:  122 FVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248          
BLAST of CV713021 vs. ExPASy Swiss-Prot
Match: RL7_BOVIN (60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.057e-46
Identity = 88/127 (69.29%), Postives = 104/127 (81.89%), Query Frame = -2
Query:  304 FLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 684
            F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK++K+RIALTDN++I ++LGK+GIICMEDLIHEI TVG  FKEANNFLWPF           K  H+VEGGDAGNRE+ IN LIRRMN
Sbjct:  122 FVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248          
BLAST of CV713021 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 8.643e-45
Identity = 86/129 (66.67%), Postives = 105/129 (81.40%), Query Frame = -2
Query:  304 VFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKR-NHYVEGGDAGNRENYINELIRRMN 687
            VF++V KAT  M+  VEP+V YGYPNLKSV+ELIYKRGYGK++KQR+ALTDNSIIE+ LGK+GIICMEDLIHEI TVGP+FK+A+NFLWPF           ++  H++EGGD GNRE +IN LIR+MN
Sbjct:  120 VFVRVTKATAEMIKIVEPWVAYGYPNLKSVKELIYKRGYGKVNKQRVALTDNSIIEENLGKYGIICMEDLIHEIYTVGPNFKQASNFLWPFKLSNPTGGFRTRKFKHFIEGGDLGNREEHINALIRQMN 248          
The following BLAST results are available for this feature:
BLAST of CV713021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL73_ARATH1.679e-5682.0360S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL72_ARATH2.193e-5682.8160S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL74_ARATH5.401e-5579.6960S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL7_MOUSE4.145e-4770.8760S ribosomal protein L7 OS=Mus musculus GN=Rpl7 P... [more]
RL7_RAT5.414e-4770.0860S ribosomal protein L7 OS=Rattus norvegicus GN=R... [more]
RL7_PONAB2.057e-4669.2960S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]
RL7_MACFA2.057e-4669.2960S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_HUMAN2.057e-4669.2960S ribosomal protein L7 OS=Homo sapiens GN=RPL7 P... [more]
RL7_BOVIN2.057e-4669.2960S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=... [more]
RL7_NEUCR8.643e-4566.6760S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0002D10_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713021 ID=CV713021; Name=CV713021; organism=Citrus sinensis; type=EST; length=688bp
TTTTTTTTTTTTTTTTTACAAAATAGCACAATATTATATCAATCATGAGG
CCTTCATGCTTTTGAAAATCTGGACATACATAAAAAATTATGAACTAACC
CTCGAATCCGAAGCAAAATAAAATTTCCAAATAACATCTCATGATCCATT
GTTTAAAACAAAAACTGTTTCCACATTCAAAGGGGGAACTAAAATTTTGA
TTGCTTCGGTACCAACAATATCTTAGCATAAGAACCTCAAAACTCTTAAA
TAATGAAACACCTCAAAACTCTAAATAATCATCAAAATAATGCGAACTGC
CTAGTTCATTCTTCTGATCAGCTCATTGATGTAGTTCTCACGGTTTCCAG
CATCACCACCCTCGACATAGTGGTTCCTCTTCTTCTTCAGGCCACCCAAT
GGTGCCTTAAGCTTAAATGGCCATAAAAAGTTGTTAGCCTCCTTAAAATG
AGGTCCCACTGTCATAATCTCATGGATCAGGTCTTCCATGCAGATGATAC
CGAACTTGCCCAAAGCCTTCTCAATAATCGAGTTATCAGTCAAAGCAATT
CTCTGCTTATCTAGCTTTCCATATCCCCTCTTGTAAATGAGCTCCCTAAC
ACTCTTCAAATTGGGGTATCCGTAGGTGACGTAAGGTTCAACCCTATGAA
GCATGTTCATGGTAGCTTTGTTCACTTTAAGAAAAACT
back to top