CV713020

Overview
NameCV713020
Unique NameCV713020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6065 contig Csv1_Contig6065:439..1204. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV713020 vs. ExPASy Swiss-Prot
Match: UBQL4_MOUSE (Ubiquilin-4 OS=Mus musculus GN=Ubqln4 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.604e-37
Identity = 70/138 (50.72%), Postives = 105/138 (76.09%), Query Frame = 1
Query:  376 EQVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNA----------TSMAGNAGNDNSNP 759
            +Q+Q+QL  NP ++ +IM  P+VQ++M+NP++MR++IM NPQM+++++RNPE++H+LN+P  +RQT+E ARNP +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP   A          +S+AGN+ N +S P
Sbjct:  178 QQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESVPGGYNALRRMYTDIQEPMFTAAREQFGNNPFSSLAGNSDNSSSQP 315          
BLAST of CV713020 vs. ExPASy Swiss-Prot
Match: UBQL4_HUMAN (Ubiquilin-4 OS=Homo sapiens GN=UBQLN4 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.049e-36
Identity = 69/138 (50.00%), Postives = 106/138 (76.81%), Query Frame = 1
Query:  376 EQVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNA----------TSMAGNAGNDNSNP 759
            +Q+Q+QL  NP ++ +IM  P+VQ++M+NP++MR++IM NPQM+++++RNPE++H+LN+P  +RQT+E ARNP +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP  +A          +S+AGN+ + +S P
Sbjct:  183 QQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQFGNNPFSSLAGNSDSSSSQP 320          
BLAST of CV713020 vs. ExPASy Swiss-Prot
Match: UBQL2_HUMAN (Ubiquilin-2 OS=Homo sapiens GN=UBQLN2 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 3.051e-36
Identity = 93/250 (37.20%), Postives = 126/250 (50.40%), Query Frame = 1
Query:   31 KRRSAEKCEVPPQQQRLIYKGRILKDDQTLKSYGLEADHTVHLV-----RGFXXXXXXXXXXXXXXXXXXXXXXXXRPVSTNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEFEQVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFA 765
            K   +++ +    Q  LI+ G+ILKD  TL  +G+    TVHLV     R                           P+STN                                       Q+QQQL  +P +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP +M+EMMRN D A+SN+ES P G+N LRRMY  +QEP LNA            NPFA
Sbjct:   58 KEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKSQNRPQGQSTQPSNAAGTNTTSASTPRSNSTPISTNSNPFGLGSLGGLAGLSSLGLSSTNFSELQ---------SQMQQQLMASPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQ-----EQFGGNPFA 293          
BLAST of CV713020 vs. ExPASy Swiss-Prot
Match: UBQL1_MOUSE (Ubiquilin-1 OS=Mus musculus GN=Ubqln1 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.204e-36
Identity = 72/129 (55.81%), Postives = 96/129 (74.42%), Query Frame = 1
Query:  379 QVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFA 765
            Q+Q+QL  NP +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP LNA            NPFA
Sbjct:  165 QMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLNAAQ-----EQFGGNPFA 288          
BLAST of CV713020 vs. ExPASy Swiss-Prot
Match: UBQL1_PONAB (Ubiquilin-1 OS=Pongo abelii GN=UBQLN1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.978e-35
Identity = 71/129 (55.04%), Postives = 96/129 (74.42%), Query Frame = 1
Query:  379 QVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFA 765
            Q+Q+QL  NP +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP L+A            NPFA
Sbjct:  174 QMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQ-----EQFGGNPFA 297          
BLAST of CV713020 vs. ExPASy Swiss-Prot
Match: UBQL1_HUMAN (Ubiquilin-1 OS=Homo sapiens GN=UBQLN1 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.978e-35
Identity = 71/129 (55.04%), Postives = 96/129 (74.42%), Query Frame = 1
Query:  379 QVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFA 765
            Q+Q+QL  NP +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP L+A            NPFA
Sbjct:  174 QMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQ-----EQFGGNPFA 297          
BLAST of CV713020 vs. ExPASy Swiss-Prot
Match: UBQL2_MOUSE (Ubiquilin-2 OS=Mus musculus GN=Ubqln2 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.373e-35
Identity = 71/129 (55.04%), Postives = 95/129 (73.64%), Query Frame = 1
Query:  379 QVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFA 765
            Q+QQQL  +P +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP +M+EMMRN D A+SN+ES P G+N LRRMY  +QEP LNA            NPFA
Sbjct:  181 QMQQQLLASPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQ-----EQFGGNPFA 304          
BLAST of CV713020 vs. ExPASy Swiss-Prot
Match: UBQL1_RAT (Ubiquilin-1 OS=Rattus norvegicus GN=Ubqln1 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.754e-35
Identity = 70/129 (54.26%), Postives = 96/129 (74.42%), Query Frame = 1
Query:  379 QVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFA 765
            Q+Q+QL  NP +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P+ +RQTLE ARNP +M+EMMRN +R +SN+ES P G+N LRRMY  +QEP LNA            NPFA
Sbjct:  165 QMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPNIMRQTLELARNPAMMQEMMRNQERDLSNLESIPGGYNALRRMYTDIQEPMLNAAQ-----EQFGGNPFA 288          
BLAST of CV713020 vs. ExPASy Swiss-Prot
Match: UBQL_DICDI (Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.157e-33
Identity = 69/132 (52.27%), Postives = 95/132 (71.97%), Query Frame = 1
Query:  367 PEFEQVQQQLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATS-MAGNAGNDNSNP 759
            P   Q    +  NP I +E+ N  ++ +L++NP+I R+++M NP+MRE+++ NPE+A +L+DP  LRQ+LE  RNPELMREMMRN DRAM NIE+ PEGFN+LRRMY  +QEP +NA +  A +    NSNP
Sbjct:   98 PGVPQNINDMMNNPMI-QEMFNSRMMDSLLDNPDIFRDMMMGNPEMREVLNNNPEMAQMLSDPRQLRQSLEMMRNPELMREMMRNADRAMINIENHPEGFNLLRRMYTDIQEPLMNAANQQAASQNQTNSNP 228          
BLAST of CV713020 vs. ExPASy Swiss-Prot
Match: UBQL3_MOUSE (Ubiquilin-3 OS=Mus musculus GN=Ubqln3 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.862e-26
Identity = 49/104 (47.12%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  406 PNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNA 717
            P ++ ++++ P +Q L++N  ++R L+++NP M+ +I +NPE+ HILN+P  +RQT+E  RNP +M+EMMR+ DRA+SN+ES P G+N+LR MY  + +P LNA
Sbjct:  165 PELVAQLVDDPFIQGLLSNTGLVRQLVLDNPHMQHLIQQNPEIGHILNNPEIMRQTMEFLRNPSMMQEMMRSQDRALSNLESIPGGYNVLRTMYTDIMDPMLNA 268          
The following BLAST results are available for this feature:
BLAST of CV713020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
UBQL4_MOUSE3.604e-3750.72Ubiquilin-4 OS=Mus musculus GN=Ubqln4 PE=1 SV=1[more]
UBQL4_HUMAN1.049e-3650.00Ubiquilin-4 OS=Homo sapiens GN=UBQLN4 PE=1 SV=2[more]
UBQL2_HUMAN3.051e-3637.20Ubiquilin-2 OS=Homo sapiens GN=UBQLN2 PE=1 SV=2[more]
UBQL1_MOUSE5.204e-3655.81Ubiquilin-1 OS=Mus musculus GN=Ubqln1 PE=1 SV=1[more]
UBQL1_PONAB1.978e-3555.04Ubiquilin-1 OS=Pongo abelii GN=UBQLN1 PE=2 SV=1[more]
UBQL1_HUMAN1.978e-3555.04Ubiquilin-1 OS=Homo sapiens GN=UBQLN1 PE=1 SV=2[more]
UBQL2_MOUSE3.373e-3555.04Ubiquilin-2 OS=Mus musculus GN=Ubqln2 PE=1 SV=1[more]
UBQL1_RAT5.754e-3554.26Ubiquilin-1 OS=Rattus norvegicus GN=Ubqln1 PE=1 SV... [more]
UBQL_DICDI3.157e-3352.27Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=... [more]
UBQL3_MOUSE2.862e-2647.12Ubiquilin-3 OS=Mus musculus GN=Ubqln3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002D10_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV713020 ID=CV713020; Name=CV713020; organism=Citrus sinensis; type=EST; length=766bp
GGGGAATTCCCAGCCGTTTGAAACATTTCAAAGCGGCGTTCGGCGGAAAA
GTGCGAGGTTCCGCCTCAGCAACAGCGGTTGATTTATAAAGGTCGGATCT
TGAAGGACGATCAAACCCTCAAAAGCTATGGTTTGGAGGCAGATCACACT
GTGCACTTGGTTCGTGGTTTTGCACCTGCTGCATCTACAAACAATGCTGC
GCCAACCAACTCTGGAGGTTCAACTACTACTCCAAACAGCACAAGGCCCG
TGAGTACTAATGAAGGTGATGCTCTTGGAGGAGCTGGTCTTGGAGCTTCT
CTGTTTCCTGGACTTGGCATCAATGGTTTAGGTGGCAGCGGAGGTGGTTT
GTTTGGAGCTGGACTTCCAGAATTTGAACAAGTGCAGCAACAACTGACCC
GGAACCCCAACATTATGAGAGAGATCATGAATATGCCTGTCGTGCAGAAT
CTTATGAATAACCCTGAGATAATGCGAAACTTGATAATGAACAATCCTCA
AATGCGTGAAATTATTGATCGAAACCCTGAGCTAGCACACATACTAAATG
ACCCTAGCACTCTGCGTCAGACACTTGAAGCTGCAAGAAATCCAGAGCTC
ATGCGTGAAATGATGCGCAATACTGATAGAGCAATGAGCAATATTGAATC
TTCTCCTGAGGGATTTAATATGCTGAGGCGCATGTATGAAACTGTGCAAG
AGCCATTTCTTAATGCTACCTCTATGGCTGGGAATGCTGGAAATGACAAC
TCAAACCCATTTGCAG
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