CV712952

Overview
NameCV712952
Unique NameCV712952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8475 contig Csv1_Contig8475:55..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV712952 vs. ExPASy Swiss-Prot
Match: ACO13_PONAB (Acyl-coenzyme A thioesterase 13 OS=Pongo abelii GN=ACOT13 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19
Identity = 51/119 (42.86%), Postives = 73/119 (61.34%), Query Frame = 1 
Query:   85 FERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFXXXXXXXXAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYL 441
            FER ++  + +  + PG+VIC MKV     NA   +HGG TATLVD + + A+      + GVSV++N++Y+  A         A VL+ GK +A  SV+L  K TGK++AQGRHTK+L
Sbjct:   21 FER-VLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHL 138
[Close]
BLAST of CV712952 vs. ExPASy Swiss-Prot
Match: ACO13_HUMAN (Acyl-coenzyme A thioesterase 13 OS=Homo sapiens GN=ACOT13 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19
Identity = 51/119 (42.86%), Postives = 73/119 (61.34%), Query Frame = 1 
Query:   85 FERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFXXXXXXXXAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYL 441
            FER ++  + +  + PG+VIC MKV     NA   +HGG TATLVD + + A+      + GVSV++N++Y+  A         A VL+ GK +A  SV+L  K TGK++AQGRHTK+L
Sbjct:   21 FER-VLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHL 138
[Close]
BLAST of CV712952 vs. ExPASy Swiss-Prot
Match: ACO13_MOUSE (Acyl-coenzyme A thioesterase 13 OS=Mus musculus GN=Acot13 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.314e-17
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 1 
Query:   85 FERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFXXXXXXXXAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYL 441
            F+R +++ + +  + P ++IC MKV  +  N    +HGG TATLVD + + A+      + GVSV++N++Y+  A         A +L+ GK +A  SV+L  K TGK++AQGRHTK+L
Sbjct:   21 FDR-VLEKVTLVSAAPEKLICEMKVEEQHTNKLGTLHGGLTATLVDSISTMALMCTERGAPGVSVDMNITYMSPAKIGEEIVITAHILKQGKTLAFASVDLTNKTTGKLIAQGRHTKHL 138
The following BLAST results are available for this feature:
BLAST of CV712952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ACO13_PONAB5.507e-1942.86Acyl-coenzyme A thioesterase 13 OS=Pongo abelii GN... [more]
ACO13_HUMAN5.507e-1942.86Acyl-coenzyme A thioesterase 13 OS=Homo sapiens GN... [more]
ACO13_MOUSE2.314e-1738.66Acyl-coenzyme A thioesterase 13 OS=Mus musculus GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0002B22_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712952 ID=CV712952; Name=CV712952; organism=Citrus sinensis; type=EST; length=642bp
GGCACTGAGGGAGAATATTTGGAGAAAGGAGGAGGAGATGACGACAAGAA
CAAATCGACGATGGAGGAGATGCCTACGAAATTCTTTGAACGCTTTATCA
TGCAAGGCCTTCGCGTTGACCTCAGCGAACCTGGCCGCGTCATTTGCTCT
ATGAAAGTCCCTCCCCGTTTACTGAACGCTGGTAATTTCATGCACGGTGG
GGCCACTGCCACGCTGGTGGACTTGGTGGGGTCAGCCGCAATCTTCACCG
TTGGAGCTCCGTCGGTTGGTGTTTCTGTGGAGATCAATGTTTCGTACTTG
GATGCTGCTTTTGGTGGGGAGGAGATTGAGATAGAGGCCAAGGTATTACG
TGTTGGAAAGGCTGTTGCTGTTGTCAGTGTTGAGCTCAGGAAGAAAGATA
CTGGGAAAATTGTTGCCCAGGGGCGTCATACTAAGTACCTTGCTATCTCT
AGTAAAATGTGAATCTTCTGTAATTTTTTCCTTTATCTGAATATTTGGGA
CTGCCTTCCCTTTCTAATTCCTTATTTGAATAAGTAGTGTATTTATCATC
AGATAAGTAGAAATGTTATTATAGTGTGGTACACTTATTCTTCATTCATG
CTTTTAATAACCGAGATTCAATTGAAAATCTTGTAAGATTGG
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