CV712945

Overview
NameCV712945
Unique NameCV712945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9972 contig Csv1_Contig9972:180..1045. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712945 vs. ExPASy Swiss-Prot
Match: PPCS_HUMAN (Phosphopantothenate--cysteine ligase OS=Homo sapiens GN=PPCS PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.268e-36
Identity = 84/181 (46.41%), Postives = 112/181 (61.88%), Query Frame = -2
Query:  209 AIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDIQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNG--KIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 745
            A+R +  A A G  L + FTT+ +YL +LQ  A +   LGP +MFYLAAAVSDFYVP   M EHKIQS  GPL I +  VPK+LS L K+WAP AF ISFKLETD  I++ +A  A + Y    VVAN L SR+  V +VT +   K+ +  ++     ++E+ +   L  RH+ +I D N
Sbjct:  131 ALRSYQEAAAAGTFLAVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIQSSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVVVANILESRQSFVFIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFIGDRN 311          
BLAST of CV712945 vs. ExPASy Swiss-Prot
Match: PPCS_MOUSE (Phosphopantothenate--cysteine ligase OS=Mus musculus GN=Ppcs PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.025e-34
Identity = 79/181 (43.65%), Postives = 112/181 (61.88%), Query Frame = -2
Query:  209 AIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDIQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNG--KIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 745
            A++ +  A A G  L + FTT+ +YL +LQ  A++   LG  +MFYLAAAVSDFY+P   M EHKI S  GPL I +  VPKMLS L K+WAP AF +SFKLETD +I++ +A  A + Y    VVAN L S K  V++VT +   ++ +  ++ +    +E+ +   L  RH+ +I D N
Sbjct:  131 ALQSYQEAAAAGTFLAVEFTTLADYLHLLQAAALALSPLGSSAMFYLAAAVSDFYIPVSEMPEHKIHSSGGPLQITMKMVPKMLSPLVKDWAPKAFVVSFKLETDPDIIISRARNALEVYQHQVVVANILESIKSFVIIVTKDSETELLLSEEEVAKGLVIEEKIVDDLRSRHTAFICDKN 311          
BLAST of CV712945 vs. ExPASy Swiss-Prot
Match: YJ2I_SCHPO (Uncharacterized protein C4B3.18 OS=Schizosaccharomyces pombe GN=SPCC4B3.18 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.111e-27
Identity = 68/155 (43.87%), Postives = 96/155 (61.94%), Query Frame = -2
Query:  320 VCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGP--LDIQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTN 778
            V Q +   V  A+ +         L+ +P+TT+ EYL  L+ IA   + +   ++FYLAAAVSDF++P K ++EHKIQSGSG   L++++  VPK L  L   WAP A  ISFKLETD  IL++KA +A ++Y    V+AN L +RK  V  VT+
Sbjct:  120 VKQEFQSTVFNALNELDTYTKHHRLIMIPYTTLTEYLWYLKAIAERLQIIASRALFYLAAAVSDFHIPPKELSEHKIQSGSGSNKLEVKMHPVPKFLRFLVDTWAPEASIISFKLETDPSILIDKARVALQRYNHQLVIANLLSTRKRSVAFVTS 274          
BLAST of CV712945 vs. ExPASy Swiss-Prot
Match: YII3_YEAST (Uncharacterized protein YIL083C OS=Saccharomyces cerevisiae GN=YIL083C PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.353e-21
Identity = 66/186 (35.48%), Postives = 94/186 (50.54%), Query Frame = -2
Query:  206 LLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGS-------------------GPLDIQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSNT 706
            LL LPFTT+ +YL  L+ IA    + G   +FYLAAAVSDF+VP+  + +HKIQSG                    G L + L  VPK L  L + WA  A  +SFKLETD  +LL K   A  +Y    V+ N L +R +QV+ V+   +   +         +E+ +   ++ RH  ++  S T
Sbjct:  177 LLLLPFTTVNQYLWSLKSIAKLLNNSG--CLFYLAAAVSDFFVPYSRLPQHKIQSGDNGKMGANNDTEGTTRTTPDGKLIVNLDPVPKFLRRLVESWATQAMIVSFKLETDESMLLYKCTQALDRYNHQLVIGNLLQTRNKQVIFVSPENRKGDWVRLDEKHHIIEEMIIPEVIARHDKWVAHSKT 360          
The following BLAST results are available for this feature:
BLAST of CV712945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PPCS_HUMAN1.268e-3646.41Phosphopantothenate--cysteine ligase OS=Homo sapie... [more]
PPCS_MOUSE2.025e-3443.65Phosphopantothenate--cysteine ligase OS=Mus muscul... [more]
YJ2I_SCHPO9.111e-2743.87Uncharacterized protein C4B3.18 OS=Schizosaccharom... [more]
YII3_YEAST3.353e-2135.48Uncharacterized protein YIL083C OS=Saccharomyces c... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0002B19_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002B19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712945 ID=CV712945; Name=CV712945; organism=Citrus sinensis; type=EST; length=866bp
TTACAATAATTTTGTTGTAGATATTGATTTATATAATTGCTACAACGTGT
GCAGAATGGTATATATATGGACTATGATATTTATTGTCTCCAGAGTGCAG
ACTCGTAGGCTTCCTAACTCCAGCTTAGTAAAAGTCCAGACACACTTATC
TCATGTCAAACAGGAACTAAGAAAGTTTTAAAGCGTATTTGAGAGCTGTC
TGCTATGTGTTGGAATCCTTGATGTAAACGGAATGTCTGTCCACAAGCAG
TTTAGTCAGGGGCTTTTCTACATCAGAATCGGAGCTCGTCTTGTCTCGAT
AAACTGGAATTTTCCCATTATTTGTGACAACTACAACTTGCTCCTTGCGG
GACAAGAGCTCATTAGCCACAACTGCATGCATCCCATACTTCTTCCGAGC
CATATCTGCCTTCTCTAAGAGAATCTCTGCATCTGTTTCAAGCTTAAATG
ATATGCAGAAGGCCATGGGTGCCCATTCTTTCCTGAGAACTGAGAGCATT
TTTGGCACCTGCAAAAGTTGAATGTCCAAAGGGCCAGAACCTGACTGAAT
CTTGTGCTCTGCCATGCTTTTCCATGGGACATAGAAGTCAGAAACAGCAG
CAGCAAGATAGAACATAGAACATGGTCCAAGACTCCTAGAAGATACAGCA
ATCATCTGTAGCATCTGAAGATACTCGAATATAGTTGTAAAGGGAAGCTT
CAACAGAAGGCCTCCTGCTACTGCAGCGTGATGATCCCTAATGGCTCTCT
TCACTGCTTCGGAATAAGGTTGGCAGACTTGAACTGCTGACTCCTTAGTG
ACCTCAAAACATTCAAGAAACGCATCATCAGGGAGAGAACTGCAATATGG
CTCGCAAGTTCCCCTT
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