CV712941

Overview
NameCV712941
Unique NameCV712941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9984 contig Csv1_Contig9984:52..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712941 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 372.089 bits (954), Expect = 2.159e-102
Identity = 178/192 (92.71%), Postives = 189/192 (98.44%), Query Frame = -2
Query:  259 KYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARLS 834
            KYDGRFKDIFQEVYEA+WKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRH+RVHQKGGETSTNSIASIFAW+RGLAHRAKLD+NA+LLDFTEKLEAAC+G VE+GKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L ARLS
Sbjct:  221 KYDGRFKDIFQEVYEASWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEKLEAACIGVVEAGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELSARLS 412          
BLAST of CV712941 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 3.683e-102
Identity = 177/191 (92.67%), Postives = 186/191 (97.38%), Query Frame = -2
Query:  262 KYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARL 834
            KYDGRFKDIFQEVYEANWKSK+E AGIWYEHRLIDDM AYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW+RGLAHRA LDNN RLLDFTEKLEAAC+G VESGKMTKDLALIIHGSK++R+HYLNTEEFIDAVA++L+ARL
Sbjct:  220 KYDGRFKDIFQEVYEANWKSKYEEAGIWYEHRLIDDMAAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIHGSKLSRDHYLNTEEFIDAVADELKARL 410          
BLAST of CV712941 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 1.400e-101
Identity = 179/192 (93.23%), Postives = 187/192 (97.40%), Query Frame = -2
Query:  262 KYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLAL-IIHGSKMTREHYLNTEEFIDAVANDLRARL 834
            KYDGRFKDIFQEVYEANWKSK+E AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW+RGLAHRA LDNN RLLDFTEKLEAAC+G VESGKMTKDLAL IIHGSK++REHYLNTEEFIDAVA++L+ARL
Sbjct:  220 KYDGRFKDIFQEVYEANWKSKYEEAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIIHGSKLSREHYLNTEEFIDAVADELKARL 411          
BLAST of CV712941 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 3.118e-101
Identity = 175/192 (91.15%), Postives = 187/192 (97.40%), Query Frame = -2
Query:  259 KYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARLS 834
            KYDGRFKDIFQEVYEA WKSK+EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRH+RVHQKGGETSTNSIASIFAW+RGLAHRAKLD+NA LLDFTEKLEAAC+G VESGKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L+ ++S
Sbjct:  241 KYDGRFKDIFQEVYEAGWKSKYEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNATLLDFTEKLEAACIGVVESGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELKTKIS 432          
BLAST of CV712941 vs. ExPASy Swiss-Prot
Match: IDHC_RAT (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.409e-77
Identity = 138/193 (71.50%), Postives = 161/193 (83.42%), Query Frame = -2
Query:  259 KYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 834
            KYDGRFKDIFQE+Y+  +KSKFEA  IWYEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAWSRGLAHRAKLDNN  L  F   LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  218 KYDGRFKDIFQEIYDKQYKSKFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFANALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of CV712941 vs. ExPASy Swiss-Prot
Match: IDHC_MICOH (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.409e-77
Identity = 137/193 (70.98%), Postives = 162/193 (83.94%), Query Frame = -2
Query:  259 KYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 834
            KYDGRFKDIFQE+Y+  +KS+FEA  IWYEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAHGTVTRHYR+HQKG ETSTN IASIFAWSRGLAHRA+LDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  218 KYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNPIASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of CV712941 vs. ExPASy Swiss-Prot
Match: IDHC_MICME (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.409e-77
Identity = 137/193 (70.98%), Postives = 162/193 (83.94%), Query Frame = -2
Query:  259 KYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 834
            KYDGRFKDIFQE+Y+  +KS+FEA  IWYEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAHGTVTRHYR+HQKG ETSTN IASIFAWSRGLAHRA+LDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  218 KYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNPIASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of CV712941 vs. ExPASy Swiss-Prot
Match: IDHC_SHEEP (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 2.035e-76
Identity = 136/193 (70.47%), Postives = 161/193 (83.42%), Query Frame = -2
Query:  259 KYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 834
            KYDGRFKDIFQE+Y+  +KS+FEA  IWYEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+ +L+
Sbjct:  218 KYDGRFKDIFQEIYDKQYKSQFEAQNIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLQLKLA 410          
BLAST of CV712941 vs. ExPASy Swiss-Prot
Match: IDHC_MOUSE (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 7.734e-76
Identity = 136/193 (70.47%), Postives = 161/193 (83.42%), Query Frame = -2
Query:  259 KYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 834
            KYDGRFKDIFQE+Y+  +KS+FEA  I YEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAWSRGLAHRAKLDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  218 KYDGRFKDIFQEIYDKKYKSQFEAQNICYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFAKALEDVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of CV712941 vs. ExPASy Swiss-Prot
Match: IDHC_BOVIN (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos taurus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.010e-75
Identity = 135/193 (69.95%), Postives = 160/193 (82.90%), Query Frame = -2
Query:  259 KYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 834
            KYDGRFKDIFQE+Y+  +KS+FEA  IWYEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAHGTVTRHYR++QKG ET TN IASIFAW+RGLAHRAKLDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+ +L+
Sbjct:  218 KYDGRFKDIFQEIYDKQYKSEFEAQNIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETLTNPIASIFAWTRGLAHRAKLDNNKELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLQLKLA 410          
The following BLAST results are available for this feature:
BLAST of CV712941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_SOYBN2.159e-10292.71Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHC_TOBAC3.683e-10292.67Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOLTU1.400e-10193.23Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHP_MEDSA3.118e-10191.15Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_RAT1.409e-7771.50Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rat... [more]
IDHC_MICOH1.409e-7770.98Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_MICME1.409e-7770.98Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_SHEEP2.035e-7670.47Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovi... [more]
IDHC_MOUSE7.734e-7670.47Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus... [more]
IDHC_BOVIN1.010e-7569.95Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0002B17_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712941 ID=CV712941; Name=CV712941; organism=Citrus sinensis; type=EST; length=835bp
ACGTAAATTGTGGCAGCAATAGTTTTGTTTATAACAAGCCATGTTCAAGA
CATTTGCTTGCATGAAAATGAGAGTTTGTCGATCAACAGGAAAGCAGTCT
ATTGTAGGAATTAGAAGAGAACCAAATCCCAATCCCCAATTTTCCCCTCT
TCAATTATTTCTTCTCAGCATAATATGAAAAAGATAACCAAAGGAAGCTT
CCCCAAGTCTTTACCTTTGAATGTGTAGCATCTGCAACAAAAAAAATCAT
GCTTTGCCAGAGAGTCTTGCTCTTAGATCGTTGGCCACAGCATCAATGAA
CTCTTCAGTATTCAGATAGTGTTCCCTAGTCATCTTAGATCCATGGATAA
TAAGTGCAAGATCCTTGGTCATCTTCCCAGATTCAACAGTGCCAACACAT
GCAGCTTCTAGTTTCTCAGTAAAATCCAATAGCCTAGCATTGTTGTCCAA
CTTCGCCCTATGTGCAAGCCCTCGTGACCAAGCAAAGATGGAGGCTATGC
TGTTTGTGCTAGTTTCACCACCTTTCTGATGAACTCTGTAGTGTCGGGTG
ACTGTTCCATGGGCGGCTTCGGCTTCAATTGTCTTCCCATCAGGGCATAC
CAGTACAGATGTCATCAATCCAAGAGATCCAAACCCTTGAGCTAGGAAAT
CACTCTGGACATCTCCATCATAATTTTTGCAAGCCCACACGTAACCTCCT
TCACTTTTGAGAGCATAAGCTACCATATCATCAATGAGACGATGTTCATA
CCATATGCCAGCAGCTTCAAACTTTGACTTCCAGTTTGCCTCATAAACCT
CTTGAAATATGTCTTTGAATCTTCCATCATACTTC
back to top