CV712938

Overview
NameCV712938
Unique NameCV712938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2948 contig Csv1_Contig2948:4..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712938 vs. ExPASy Swiss-Prot
Match: ISAM1_ARATH (Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g16710 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.743e-27
Identity = 56/64 (87.50%), Postives = 63/64 (98.44%), Query Frame = 2
Query:  215 ANERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTT 406
            A+E+ KFDELVE+KGV+IL++PKALMHVIGTKMDFVDDKLRSEFVFINPNS+GQCGCGESFMTT
Sbjct:   64 ADEKGKFDELVEEKGVRILVEPKALMHVIGTKMDFVDDKLRSEFVFINPNSQGQCGCGESFMTT 127          
BLAST of CV712938 vs. ExPASy Swiss-Prot
Match: ISAM3_ARATH (Iron-sulfur assembly protein IscA-like 3, mitochondrial OS=Arabidopsis thaliana GN=At2g36260 PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.443e-23
Identity = 50/64 (78.12%), Postives = 59/64 (92.19%), Query Frame = 2
Query:  215 ANERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTT 406
            A E+ KFDE+VE+KGVKIL+DPKA+MHVIGT+MDFVDDKLRSEFVF+NPN+  +CGCGESF TT
Sbjct:   47 AQEKGKFDEVVEEKGVKILVDPKAVMHVIGTEMDFVDDKLRSEFVFVNPNAT-KCGCGESFTTT 109          
BLAST of CV712938 vs. ExPASy Swiss-Prot
Match: ISA1_YEAST (Iron sulfur assembly protein 1 OS=Saccharomyces cerevisiae GN=ISA1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.304e-18
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 2
Query:  221 ERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM 400
            E  KFDE+VE  GVKI+ID KAL  +IG++MD++DDKL S+FVF NPNSKG CGCGESFM
Sbjct:  190 EPGKFDEVVEQDGVKIVIDSKALFSIIGSEMDWIDDKLASKFVFKNPNSKGTCGCGESFM 249          
BLAST of CV712938 vs. ExPASy Swiss-Prot
Match: Y484_RICPR (Uncharacterized protein RP484 OS=Rickettsia prowazekii GN=RP484 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.028e-16
Identity = 34/61 (55.74%), Postives = 50/61 (81.97%), Query Frame = 2
Query:  215 ANERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 397
            A+ + +FDE+VE+KGV+ILIDPK LM+++G++MD+V+   +S+F F NPN K  CGCG+SF
Sbjct:   48 ADNKNQFDEVVEEKGVRILIDPKTLMYILGSEMDYVETNFKSQFTFTNPNEKANCGCGKSF 108          
BLAST of CV712938 vs. ExPASy Swiss-Prot
Match: ISCA1_DICDI (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=isca1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = 2
Query:  215 ANERAKFDE-LVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT 403
            A ++ KFDE +V DK + I++D KAL+ VIGT+MD++++ ++ EF+FINPN+   CGCGESF T
Sbjct:   62 ATQKNKFDETVVADKDINIIVDSKALLSVIGTEMDYIEEPIKKEFIFINPNATNTCGCGESFTT 125          
BLAST of CV712938 vs. ExPASy Swiss-Prot
Match: ISA1_SCHPO (Iron sulfur assembly protein 1 OS=Schizosaccharomyces pombe GN=isa1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 2
Query:  230 KFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT 403
            KFDE+V+  G+ I++  +AL+ +IG+ MD+ DD L+S F+F NPN K  CGCGESF T
Sbjct:  131 KFDEIVKQDGISIIVARRALLQIIGSVMDYRDDDLQSRFIFSNPNVKSTCGCGESFST 188          
BLAST of CV712938 vs. ExPASy Swiss-Prot
Match: ISCA1_CHICK (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Gallus gallus GN=ISCA1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 2
Query:  236 DELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 397
            DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:   74 DEEVVQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
BLAST of CV712938 vs. ExPASy Swiss-Prot
Match: ISCA1_RAT (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Rattus norvegicus GN=Isca1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 2
Query:  236 DELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 397
            DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:   74 DEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
BLAST of CV712938 vs. ExPASy Swiss-Prot
Match: ISCA1_MOUSE (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Mus musculus GN=Isca1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 2
Query:  236 DELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 397
            DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:   74 DEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
BLAST of CV712938 vs. ExPASy Swiss-Prot
Match: ISCA1_MACFA (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Macaca fascicularis GN=ISCA1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 2
Query:  236 DELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 397
            DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:   74 DEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
The following BLAST results are available for this feature:
BLAST of CV712938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
ISAM1_ARATH1.743e-2787.50Iron-sulfur assembly protein IscA-like 1, mitochon... [more]
ISAM3_ARATH4.443e-2378.13Iron-sulfur assembly protein IscA-like 3, mitochon... [more]
ISA1_YEAST4.304e-1870.00Iron sulfur assembly protein 1 OS=Saccharomyces ce... [more]
Y484_RICPR4.028e-1655.74Uncharacterized protein RP484 OS=Rickettsia prowaz... [more]
ISCA1_DICDI1.296e-1453.13Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISA1_SCHPO9.286e-1353.45Iron sulfur assembly protein 1 OS=Schizosaccharomy... [more]
ISCA1_CHICK1.213e-1261.11Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA1_RAT1.584e-1261.11Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA1_MOUSE1.584e-1261.11Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA1_MACFA1.584e-1261.11Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002B15_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002B15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712938 ID=CV712938; Name=CV712938; organism=Citrus sinensis; type=EST; length=717bp
AGATGGAGAGAAAGAAGAAGCAGCAGTATTTTGAGGAATTAAAAATGAAA
CCCTACACGAAGGCCCAGAAATCTAAGGAGAAATTGAGAATAATGAGAAG
AAATTTAAGTTGCCCATTGTAAAGCAAAGCAAAGATATATAACCTAGCGC
ATATCCAAGCATTCGTGAGGAAGATCTGAATCCGATTCTGTTAAAAGCTA
AAGAAAAACGGAGGGCGAATGAGAGAGCTAAGTTTGATGAGTTGGTTGAG
GATAAGGGTGTGAAGATACTGATTGATCCAAAAGCTCTCATGCATGTTAT
TGGGACCAAAATGGATTTTGTAGACGATAAGCTCAGGTCTGAGTTTGTAT
TCATTAATCCAAACTCTAAAGGGCAGTGTGGATGTGGTGAATCCTTTATG
ACAACCAGCAGTAGTGGAGCGTCTAAGCAGGGTGGAAGCTAGGGTTTCTT
ACAAACTAATATTACATGAAGAATGAATGTAGATGATTCTTTTCCCTGGC
TGACCAAGCATTATGCGCTTGTCTGAAGGTTGTGAATGAAAGGTAGACAT
CCTCGGTGAGCTTTAATGGCAGTTGGAGCAACAGGGACTTTACTAATTCG
TCCTTCTGGGAATCACTGCAGTTTTGCCGTCTACGAACAAATTTGTAAAA
CTATTGTAGCATTTTCTTCCTGGTTTTTGACAAAAATACCTCTGTAACCT
GATTATGTGATTCTTAT
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