CX302848

Overview
NameCX302848
Unique NameCX302848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302848 vs. ExPASy Swiss-Prot
Match: WIT2_ARATH (WPP domain-interacting tail-anchored protein 2 OS=Arabidopsis thaliana GN=WIT2 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.454e-45
Identity = 99/170 (58.24%), Postives = 125/170 (73.53%), Query Frame = 1
Query:   13 TKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQLYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKEL 522
            TKKV  LE Q+R+LE+Q+Q +KVSSEA+QEQQ+MLYSAIWDMETLIEDLKSK SKAES+TE+VEEQCIVLS  N EL    SF+R K K LE+ L+ AN EK   A+E+  R K++M+M++QL+++RE IQ+QLYSL  ENK+L        + S+    N     DKEL
Sbjct:  398 TKKVNSLEKQVRELEVQVQNSKVSSEANQEQQNMLYSAIWDMETLIEDLKSKASKAESRTETVEEQCIVLSTTNSELNKDVSFLRQKAKSLEAMLDLANNEKERYAQEITTRNKVLMDMMLQLSSERERIQEQLYSLAKENKIL-----RVNQCSNTYQRNGSYAGDKEL 562          
BLAST of CX302848 vs. ExPASy Swiss-Prot
Match: WIT1_ARATH (WPP domain-interacting tail-anchored protein 1 OS=Arabidopsis thaliana GN=WIT1 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.236e-28
Identity = 67/166 (40.36%), Postives = 106/166 (63.86%), Query Frame = 1
Query:   19 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQLYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDK 516
            K+  LE  LRD ++QL+ A  + EAS+E+Q++LYS + DME +IEDLKSKV KAE++ +  EE+ I++SE N E+  +  F + ++K  E  L +A   K  +AK++    K+M ++VMQLA +RE + KQ+ +L+ EN +L+ KL+  GK+      N  +   K
Sbjct:  466 KLASLEKHLRDSDLQLEHAVAAVEASKEKQNLLYSTVSDMEDVIEDLKSKVLKAENRADITEEKLIMVSESNAEVNEELKFFKGRLKEGEKYLQQAEERKLRTAKDIGVHNKIMKKLVMQLAAERERLHKQITNLSRENCVLMVKLKKVGKTGYMESGNGSEVSPK 631          
The following BLAST results are available for this feature:
BLAST of CX302848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WIT2_ARATH1.454e-4558.24WPP domain-interacting tail-anchored protein 2 OS=... [more]
WIT1_ARATH1.236e-2840.36WPP domain-interacting tail-anchored protein 1 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC08024H03SK PhyRootSw1 Citrus sinensis cDNA clone C08024H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302848 ID=CX302848; Name=CX302848; organism=Citrus sinensis; type=EST; length=724bp
ACGAGGAGTAACACGAAGAAGGTAGGCATACTTGAGAATCAGTTGAGGGA
TTTGGAAATCCAGCTACAGCAGGCAAAAGTATCTTCTGAAGCCAGTCAAG
AGCAGCAAAGCATGTTATATTCTGCAATTTGGGACATGGAAACTTTAATT
GAAGATCTGAAATCAAAAGTTTCAAAAGCTGAAAGTAAAACTGAGAGTGT
AGAAGAACAATGTATTGTACTATCTGAAGATAATTTCGAACTAAAGAACA
AACAAAGTTTTATGAGGGATAAGATTAAAATCTTGGAGTCATCATTGAAT
CGAGCTAACATTGAAAAAGCTGCAAGTGCAAAAGAAGTTAATCATAGGAC
TAAGCTTATGATGGAAATGGTTATGCAACTAGCCACTCAGAGGGAGCTCA
TTCAGAAGCAGCTATACTCTTTGACTAGTGAGAACAAGTTATTGGTGGAG
AAATTACAGTATAGTGGAAAAAGTTCTTCTGCAACCATGTATAATGCTGG
AGATACTGATGACAAAGAGCTGCTGATTAATCCCACTAACAATCTGGCTG
GTGCTACAGTGAAAACCTCTGAGGATGCAGTTTCCTTAATGAAGAGTGTT
CAGGCAGGTACTCATTTGAATATTTGTCGTATTTACACTAGAGGGCTTGC
ATATCCTGAGTTTGTTAAGAAAGTGATAGNCATGATGATGATACTACTGA
TTCTCATTATGTCTTACACAATCA
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