CV712849 | Citrus Genome Database

Overview


Name	CV712849
Unique Name	CV712849
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	411

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1498	contig	Csv1_Contig1498:396..806.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK1_ARATH (Nucleoside diphosphate kinase 1 OS=Arabidopsis thaliana GN=NDPK1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.078e-25
Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = -1

Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 411
            GATNPA S PGTIRGD AI  GRN+IHGSDSVESA+KEIALWFPDGP+NWQSS+HPW+YE
Sbjct:   89 GATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPDGPVNWQSSVHPWVYE 148

[Close]

BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDKB_FLABI (Nucleoside diphosphate kinase B OS=Flaveria bidentis PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.467e-24
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = -1

Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 411
            GATNPA+SAPGTIRGD AI  GRN+IHGSD+VESA+KEIALWFP+G  NW SSLHPWIYE
Sbjct:   89 GATNPAESAPGTIRGDFAIDIGRNVIHGSDAVESAKKEIALWFPEGVANWSSSLHPWIYE 148

[Close]

BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK1_PEA (Nucleoside diphosphate kinase 1 OS=Pisum sativum GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.935e-23
Identity = 48/60 (80.00%), Postives = 52/60 (86.67%), Query Frame = -1

Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 411
            GATNPAQS PGTIRGD AI  GRN+IHGSD+VESA KEIALWFP+G  NW+SSLH WIYE
Sbjct:   90 GATNPAQSEPGTIRGDFAIDIGRNVIHGSDAVESANKEIALWFPEGAANWESSLHSWIYE 149

[Close]

BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_HELAN (Nucleoside diphosphate kinase OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.833e-23
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = -1

Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 411
            GATNPA+S PGTIRGD AI  GRN+IHGSD+VESA+KEI LWFP+G  NW SSLHPWIYE
Sbjct:   89 GATNPAESPPGTIRGDFAIDIGRNVIHGSDAVESAKKEIGLWFPEGVANWSSSLHPWIYE 148

[Close]

BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDKA_FLABI (Nucleoside diphosphate kinase A OS=Flaveria bidentis PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.538e-23
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = -1

Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 411
            GATNPA+SAPGTIRGD AI  GRN+IHGSD+VESA+K I LWFP+G  NW SSLHPWIYE
Sbjct:   89 GATNPAESAPGTIRGDFAIDIGRNVIHGSDAVESARKVIGLWFPEGVANWSSSLHPWIYE 148

[Close]

BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK1_MESCR (Nucleoside diphosphate kinase 1 OS=Mesembryanthemum crystallinum GN=NDKP1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.457e-22
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = -1

Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 411
            GATNP  S PGTIRGD AI  GRN+IHGSD+VESA KEIALWFP+G +NWQSSLH WIYE
Sbjct:   89 GATNPLASEPGTIRGDFAIDIGRNVIHGSDAVESATKEIALWFPEGVVNWQSSLHSWIYE 148

[Close]

BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK1_TOBAC (Nucleoside diphosphate kinase 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.902e-22
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = -1

Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 411
            GATNP +SAPGTIRGD AI  GRN+IHGSD+VESA+KEIALWFP+G   WQSSLH WIYE
Sbjct:   89 GATNPLESAPGTIRGDYAIDIGRNVIHGSDAVESARKEIALWFPEGVAEWQSSLHSWIYE 148

[Close]

BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK1_SOYBN (Nucleoside diphosphate kinase 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.484e-22
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = -1

Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 411
            GATNPAQS PGTIRGD AI  GRN+IHGSD+VESA KEIALWFP+GP N QSS H WIYE
Sbjct:   90 GATNPAQSEPGTIRGDFAIDIGRNVIHGSDAVESANKEIALWFPEGPANCQSSQHSWIYE 149

[Close]

BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK_CAPAN (Nucleoside diphosphate kinase OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.245e-22
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = -1

Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 411
            GATNP +SAPGTIRGD AI  GRN+IHGSD+VESA+KEIALWFP+G   WQSSLH WIYE
Sbjct:   89 GATNPLESAPGTIRGDYAIDIGRNVIHGSDAVESARKEIALWFPEGVAEWQSSLHCWIYE 148

[Close]

BLAST of CV712849 vs. ExPASy Swiss-Prot
Match: NDK1_SPIOL (Nucleoside diphosphate kinase 1 OS=Spinacia oleracea GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.238e-22
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = -1

Query:  232 GATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 411
            GATNP  S PGTIRGD AI  GRN+IHGSD+V+SA KEIALWFPDG ++WQSSLH WIYE
Sbjct:   89 GATNPLASEPGTIRGDFAIDIGRNVIHGSDAVDSATKEIALWFPDGVVHWQSSLHSWIYE 148

The following BLAST results are available for this feature:

BLAST of CV712849 vs. ExPASy Swiss-Prot

BLAST of CV712849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164


Match Name	E-value	Identity	Description
NDK1_ARATH	1.078e-25	83.33	Nucleoside diphosphate kinase 1 OS=Arabidopsis tha...	[more]
NDKB_FLABI	3.467e-24	81.67	Nucleoside diphosphate kinase B OS=Flaveria bident...	[more]
NDK1_PEA	2.935e-23	80.00	Nucleoside diphosphate kinase 1 OS=Pisum sativum G...	[more]
NDK_HELAN	3.833e-23	78.33	Nucleoside diphosphate kinase OS=Helianthus annuus...	[more]
NDKA_FLABI	6.538e-23	78.33	Nucleoside diphosphate kinase A OS=Flaveria bident...	[more]
NDK1_MESCR	1.457e-22	78.33	Nucleoside diphosphate kinase 1 OS=Mesembryanthemu...	[more]
NDK1_TOBAC	1.902e-22	78.33	Nucleoside diphosphate kinase 1 OS=Nicotiana tabac...	[more]
NDK1_SOYBN	2.484e-22	80.00	Nucleoside diphosphate kinase 1 OS=Glycine max PE=...	[more]
NDK_CAPAN	3.245e-22	78.33	Nucleoside diphosphate kinase OS=Capsicum annuum P...	[more]
NDK1_SPIOL	4.238e-22	76.67	Nucleoside diphosphate kinase 1 OS=Spinacia olerac...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_0001P18_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001P18, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV712849 ID=CV712849; Name=CV712849; organism=Citrus sinensis; type=EST; length=411bp
CTAACCATTAACAAACTCAATTCATAATACAGTCAACAAAAAAGCTTAAA
TATTGTATATGGCAACCACAAGAATAAAAGCAGCCAACATAACCAGGATT
GGTCTCAATTTAACTCAATACTTCATAACAGTTCACCAACAAGGAGTAAC
CATAAATAAGGAAATAGGGATAGGGATAGGGATAAGTCTAACTGCAGGAA
CAATTAGGCTCCTCAACCAAACATTAGTTTACTCATAGATCCAAGGGTGA
AGGCTGCTCTGCCAGTTAATAGGGCCATCAGGGAACCACAAGGCGATTTC
TTTCTGGGCACTCTCAACTGAGTCACTTCCATGGATAATATTCCTGCCCG
TCACGATAGCCAAATCACCACGGATGGTTCCAGGAGCAGACTGCGCAGGG
TTGGTGGCTCC