CV712848

Overview
NameCV712848
Unique NameCV712848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712848 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP6 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispH PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.082e-24
Identity = 39/67 (58.21%), Postives = 54/67 (80.60%), Query Frame = -1
Query:  292 QERQDAMY*LVEEKIDLILLVGRWNSSTTSSLQKIAEDRGISSYWIDSEKRIGPGNKIAHKLMHGEL 492
            QERQDAM+ LVEE +DLI+++G +NSS T+ LQ+IA +R I S+ ID+ +RIGPGN+I HK +H +L
Sbjct:  292 QERQDAMFQLVEEPLDLIVVIGGFNSSNTTHLQEIAIERQIPSFHIDAAERIGPGNRIEHKPLHTDL 358          

HSP 2 Score: 50.8322 bits (120), Expect = 8.082e-24
Identity = 19/34 (55.88%), Postives = 30/34 (88.24%), Query Frame = -3
Query:  176 WLPKGQITIGVTAGASIPDKAVENVLKKVFEIER 277
            WLP G +TIG+T+GAS PDK VE+V++++F+++R
Sbjct:  364 WLPAGPLTIGITSGASTPDKVVEDVIERLFDLQR 397          
BLAST of CV712848 vs. ExPASy Swiss-Prot
Match: ISPH_SYNE7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (strain PCC 7942) GN=ispH PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.082e-24
Identity = 39/67 (58.21%), Postives = 54/67 (80.60%), Query Frame = -1
Query:  292 QERQDAMY*LVEEKIDLILLVGRWNSSTTSSLQKIAEDRGISSYWIDSEKRIGPGNKIAHKLMHGEL 492
            QERQDAM+ LVEE +DLI+++G +NSS T+ LQ+IA +R I S+ ID+ +RIGPGN+I HK +H +L
Sbjct:  292 QERQDAMFQLVEEPLDLIVVIGGFNSSNTTHLQEIAIERQIPSFHIDAAERIGPGNRIEHKPLHTDL 358          

HSP 2 Score: 50.8322 bits (120), Expect = 8.082e-24
Identity = 19/34 (55.88%), Postives = 30/34 (88.24%), Query Frame = -3
Query:  176 WLPKGQITIGVTAGASIPDKAVENVLKKVFEIER 277
            WLP G +TIG+T+GAS PDK VE+V++++F+++R
Sbjct:  364 WLPAGPLTIGITSGASTPDKVVEDVIERLFDLQR 397          
BLAST of CV712848 vs. ExPASy Swiss-Prot
Match: ISPH_CYAA5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain ATCC 51142) GN=ispH PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.015e-23
Identity = 38/71 (53.52%), Postives = 56/71 (78.87%), Query Frame = -1
Query:  280 QERQDAMY*LVEEKIDLILLVGRWNSSTTSSLQKIAEDRGISSYWIDSEKRIGPGNKIAHKLMHGELVEKK 492
            QERQDAM  LVEE++D+++++G +NSS T+ LQ+I+ ++GI SY IDS+KRI PGNKI HK +  ++  K+
Sbjct:  292 QERQDAMLNLVEEEVDVMVVIGGFNSSNTTHLQEISIEKGIDSYHIDSDKRILPGNKIEHKPLEKDIETKE 362          

HSP 2 Score: 50.447 bits (119), Expect = 3.015e-23
Identity = 20/34 (58.82%), Postives = 29/34 (85.29%), Query Frame = -3
Query:  185 EKNWLPKGQITIGVTAGASIPDKAVENVLKKVFE 286
            ++NWLP G+I +GVT+GAS PDK VE V++++FE
Sbjct:  361 KENWLPDGKIIVGVTSGASTPDKVVEAVIERIFE 394          
BLAST of CV712848 vs. ExPASy Swiss-Prot
Match: ISPH_THEEB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispH PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.124e-22
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = -1
Query:  301 QERQDAMY*LVEEKIDLILLVGRWNSSTTSSLQKIAEDRGISSYWIDSEKRIGPGNKIAHKLMH 492
            QERQDAM  LV+E +DL++++G +NSS T+ LQ+IA + GI SY IDS  RIGPGN+I HK +H
Sbjct:  292 QERQDAMLSLVKEPLDLMVVIGGYNSSNTTHLQEIAIEHGIPSYHIDSADRIGPGNRIEHKPLH 355          

HSP 2 Score: 49.2914 bits (116), Expect = 1.124e-22
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = -3
Query:  182 KNWLPKGQITIGVTAGASIPDKAVENVLKKVFEI 283
            +NWLP   ITIG+T+GAS PDK VE VL K+F +
Sbjct:  362 ENWLPDRPITIGITSGASTPDKVVEEVLNKIFAL 395          
BLAST of CV712848 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispH PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.903e-22
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = -1
Query:  280 QERQDAMY*LVEEKIDLILLVGRWNSSTTSSLQKIAEDRGISSYWIDSEKRIGPGNKIAHKLMHGELVEKK 492
            QERQDAM+ LVE  +DL++++G +NSS T+ LQ+I+ +R I SY IDS  RIGPGN++ HK +H  L  K+
Sbjct:  293 QERQDAMFKLVEYPLDLMVVIGGFNSSNTTHLQEISIEREIPSYHIDSADRIGPGNRVEHKPLHRPLEIKE 363          

HSP 2 Score: 50.447 bits (119), Expect = 1.903e-22
Identity = 19/36 (52.78%), Postives = 30/36 (83.33%), Query Frame = -3
Query:  179 EKNWLPKGQITIGVTAGASIPDKAVENVLKKVFEIE 286
            ++NWLP+G I +G+T+GAS PDK V +VL+K+F ++
Sbjct:  362 KENWLPEGPIVVGITSGASTPDKVVSDVLEKIFALK 397          
BLAST of CV712848 vs. ExPASy Swiss-Prot
Match: ISPH_ACAM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Acaryochloris marina (strain MBIC 11017) GN=ispH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.188e-22
Identity = 35/67 (52.24%), Postives = 53/67 (79.10%), Query Frame = -1
Query:  292 QERQDAMY*LVEEKIDLILLVGRWNSSTTSSLQKIAEDRGISSYWIDSEKRIGPGNKIAHKLMHGEL 492
            QERQDA++ LV+E +DL++++G +NSS T+ LQ+I+ D+ I SY IDS  RIGPGN++ HK ++ +L
Sbjct:  301 QERQDAIFQLVDEPLDLMVVIGGFNSSNTTHLQEISIDKNIPSYHIDSVDRIGPGNRVEHKPLNADL 367          

HSP 2 Score: 49.6766 bits (117), Expect = 4.188e-22
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = -3
Query:  167 NWLPKGQITIGVTAGASIPDKAVENVLKKVFEIEREEA 280
            NWLP G + IGVT+GAS PDK V ++++K+F I+   A
Sbjct:  372 NWLPNGPLAIGVTSGASTPDKVVSDIVEKIFSIKSASA 409          
BLAST of CV712848 vs. ExPASy Swiss-Prot
Match: ISPH_ANAVT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.453e-22
Identity = 35/68 (51.47%), Postives = 52/68 (76.47%), Query Frame = -1
Query:  289 QERQDAMY*LVEEKIDLILLVGRWNSSTTSSLQKIAEDRGISSYWIDSEKRIGPGNKIAHKLMHGELV 492
            QERQDAM  LV+E +DL++++G +NSS T+ LQ+I+++RG+ SY ID  +RI   N I H+ ++GELV
Sbjct:  292 QERQDAMLELVQENLDLMIVIGGFNSSNTTQLQQISQERGLPSYHIDVVERIKSVNSIEHRQLNGELV 359          

HSP 2 Score: 52.373 bits (124), Expect = 5.453e-22
Identity = 21/40 (52.50%), Postives = 32/40 (80.00%), Query Frame = -3
Query:  164 KNWLPKGQITIGVTAGASIPDKAVENVLKKVFEIEREEAL 283
            +NWLP G+I +GVT+GAS PDK VE+V++K+F ++   A+
Sbjct:  362 ENWLPAGKIVVGVTSGASTPDKVVEDVIEKIFALKATTAV 401          
BLAST of CV712848 vs. ExPASy Swiss-Prot
Match: ISPH_ANASP (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena sp. (strain PCC 7120) GN=ispH PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.094e-22
Identity = 35/68 (51.47%), Postives = 52/68 (76.47%), Query Frame = -1
Query:  289 QERQDAMY*LVEEKIDLILLVGRWNSSTTSSLQKIAEDRGISSYWIDSEKRIGPGNKIAHKLMHGELV 492
            QERQDAM  LV+E +DL++++G +NSS T+ LQ+I+++RG+ SY ID  +RI   N I H+ ++GELV
Sbjct:  292 QERQDAMLELVQENLDLMIVIGGFNSSNTTQLQQISQERGLPSYHIDVVERIKSINSIEHRQLNGELV 359          

HSP 2 Score: 52.373 bits (124), Expect = 7.094e-22
Identity = 21/40 (52.50%), Postives = 32/40 (80.00%), Query Frame = -3
Query:  164 KNWLPKGQITIGVTAGASIPDKAVENVLKKVFEIEREEAL 283
            +NWLP G+I +GVT+GAS PDK VE+V++K+F ++   A+
Sbjct:  362 ENWLPAGKIVVGVTSGASTPDKVVEDVIEKIFALKATAAV 401          
BLAST of CV712848 vs. ExPASy Swiss-Prot
Match: ISPH_SYNY3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=ispH PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 7.102e-22
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = -1
Query:  292 QERQDAMY*LVEEKIDLILLVGRWNSSTTSSLQKIAEDRGISSYWIDSEKRIGPGNKIAHKLMHGEL 492
            QERQDAM+ LVEE + L++++G +NSS T+ LQ+IA + GI S  IDS  RIGPGN++ HK +  +L
Sbjct:  265 QERQDAMFDLVEEDLSLMVVIGGFNSSNTTHLQEIAVEHGIPSVHIDSGDRIGPGNRVEHKPLGKDL 331          

HSP 2 Score: 51.9878 bits (123), Expect = 7.102e-22
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = -3
Query:  155 WLPKGQITIGVTAGASIPDKAVENVLKKVFEI-EREEALQLA 277
            WLP G+IT+GVT+GAS PDK VE V+KK+  I E +  L++A
Sbjct:  337 WLPAGKITVGVTSGASTPDKVVEEVMKKILAIKEAQPVLEIA 378          
BLAST of CV712848 vs. ExPASy Swiss-Prot
Match: ISPH_NOSP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ispH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.819e-21
Identity = 33/68 (48.53%), Postives = 51/68 (75.00%), Query Frame = -1
Query:  289 QERQDAMY*LVEEKIDLILLVGRWNSSTTSSLQKIAEDRGISSYWIDSEKRIGPGNKIAHKLMHGELV 492
            QERQDAM  LVE  ++L++++G +NSS T+ LQ+IA +R I SY ID+ +RI  G+ I H+ ++G+L+
Sbjct:  292 QERQDAMLELVEHNLNLMVVIGGFNSSNTTQLQQIAFERRIPSYHIDTVERIKSGDSIEHRQLNGQLI 359          

HSP 2 Score: 53.9138 bits (128), Expect = 5.819e-21
Identity = 21/40 (52.50%), Postives = 32/40 (80.00%), Query Frame = -3
Query:  164 KNWLPKGQITIGVTAGASIPDKAVENVLKKVFEIEREEAL 283
            +NWLP G+I +G+T+GAS PDK VE+V++K+F ++   AL
Sbjct:  362 ENWLPDGEIVVGITSGASTPDKVVEDVIEKIFAVKATAAL 401          
The following BLAST results are available for this feature:
BLAST of CV712848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_SYNP68.082e-2458.214-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNE78.082e-2458.214-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAA53.015e-2353.524-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THEEB1.124e-2259.384-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP41.903e-2253.524-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ACAM14.188e-2252.244-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ANAVT5.453e-2251.474-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ANASP7.094e-2251.474-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNY37.102e-2253.734-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_NOSP75.819e-2148.534-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001P17_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712848 ID=CV712848; Name=CV712848; organism=Citrus sinensis; type=EST; length=834bp
CCCCGGGCTGCAGGTTTACACAAAAACTAAAAATTTCAGATCACATGGGC
ACTAAGAAAAGACTCAGAAGAGGGTTGTGTTTATAATTTTACAATATCTA
ATTGAGAATCACATTGAAATTTATTGATAATATGTACGTTTGGACCTCAG
TTTACGCCAATTGCAAGGCTTCTTCACGCTCGATCTCGAACACCTTTTTA
AGGACATTTTCAACTGCCTTATCTGGGATGGAGGCACCGGCTGTTACACC
GATTGTGATCTGTCCTTTCGGCAGCCAATTTTTTTCTCCACCAGCTCACC
ATGCATTAATTTATGTGCTATTTTGTTTCCGGGACCTATTCTTTTCTCAC
TGTCGATCCAGTATGAGGAGATTCCACGGTCTTCTGCAATCTTTTGAAGG
CTTGAGGTAGTGCTCGAGTTCCACCTGCCAACAAGCAAAATAAGATCGAT
CTTTTCCTCAACCAACTAATACATTGCATCTTGCCGCTCCTGCAAAACTT
GAAACCAAAATCTTTAGCTTAAATTTTACTGAACGCAACTGAATGTTGCA
CAACTAGCTGTTTAACTAGTGGCTGAGTATTGCACTCTTGCGGGCGGAGC
AGTTCGGTCATTGAAAACAAATGGTCAAGTATGTTGTTAGGTTTGGCATA
TCGAGGTTCAAAATTCTGGGTTTTATAAAGATCGTTAAAAGACATGCAGT
GGACAGGAAGTTCTATGACACACAAAATTATAAAAATCTGAAAAGGAAAA
GCCATGAGTTAGAAGAAGAAATTACTTGTGCAGCATAACAAATTGTGTTG
AAGCTTATGAAGTGTTCATTGACATTTTCAACTC
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