CV712843

Overview
NameCV712843
Unique NameCV712843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712843 vs. ExPASy Swiss-Prot
Match: CHFR_DANRE (E3 ubiquitin-protein ligase CHFR OS=Danio rerio GN=chfr PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.488e-14
Identity = 60/207 (28.99%), Postives = 84/207 (40.58%), Query Frame = -1 
Query:   93 FRCNQNTVHLQCQGCGGMMPSRN------DSVPQHCLGCDRAFCGAYWHAQMVARSDSQPMCSHETFKPISERTIS-RIPFLAHEMNRHEQDVTERCIRQMGRSLQDVISDWVEKLNNREIDRTRMPLNHAE--AITARSHICNECYDKLVSFLLYWFRIAMPKHLLPADAKQREDCWYGYACRTQHHNEEHARKRNHVCRPTRGSN 686
            FRC     HL C  C   MP R          PQHCL C + FC  YW    +          H      SE  ++ +        N++E +V +  +   G S + ++ D ++ L        +  L H     ITA S +C  C  +    L Y +R  +P   LP     R +C++G  CRTQ     HA K NH+C  TR  N
Sbjct:  448 FRCPPQASHLICTCCLQPMPDRRFEHLPPQVSPQHCLVCQKPFCHVYWGCPRIG--------CHGCLARFSELNLNDKCLDGVFNGNQYESEVLQNYLSCRGMSWRHLLQDSLQAL--------QQGLYHLSDYRITANSFLCYCCGLRTFRELAYKYRERIPPSELPDAVTNRPNCYWGRNCRTQ-VKAHHALKFNHICEQTRFKN 637
The following BLAST results are available for this feature:
BLAST of CV712843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CHFR_DANRE7.488e-1428.99E3 ubiquitin-protein ligase CHFR OS=Danio rerio GN... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001P15_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001P15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712843 ID=CV712843; Name=CV712843; organism=Citrus sinensis; type=EST; length=782bp
AAAAACTAGTAGGAAGGGGGGCGGGGGGGAAGGCATTTATTAACCGCATA
CTATTTATTTCAAAAAAAAAAAATGTGAACCGTACGTTACATATTAGAGC
CCCTGGTTGGGCGACAAACATGATTTCTTTTACGAGCATGTTCTTCATTG
TGGTGCTGTGTTCGACATGCGTATCCATACCAGCAATCTTCTCTTTGCTT
TGCATCTGCTGGTAGAAGATGTTTGGGCATTGCAATCCGAAACCAGTACA
AGAGAAAGGAGACCAATTTATCATAACACTCGTTGCAAATATGACTCCTA
GCAGTTATCGCCTCAGCATGATTCAATGGCATCCTTGTTCGATCAATCTC
TCTATTGTTCAGCTTCTCAACCCAATCGGATATAACATCCTGCAATGATC
TCCCCATTTGTCTAATACACCTCTCTGTAACATCTTGTTCGTGCCGATTC
ATTTCGTGCGCAAGAAATGGAATCCTAGAGATAGTGCGTTCTGAGATAGG
TTTGAAAGTTTCATGACTGCACATAGGTTGGGAGTCACTTCTAGCAACCA
TTTGAGCATGCCAATATGCACCACAAAATGCTCTATCACATCCCAAACAG
TGTTGTGGTACACTGTCATTCCTGGACGGCATCATTCCTCCGCATCCCTG
ACATTGTAAATGCACTGTGTTCTGGTTGCAGCGGAACCCATTAATTTCAG
TACCACATTGAGGACATGGAAGCTCAATGCTGTCACTTTCTTCATCAATT
GGTGAGTGTGCCCTCTTCCGACGATGTTTCTT
back to top