CV712838

Overview
NameCV712838
Unique NameCV712838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712838 vs. ExPASy Swiss-Prot
Match: G6PD4_ARATH (Glucose-6-phosphate 1-dehydrogenase 4, chloroplastic OS=Arabidopsis thaliana GN=At1g09420 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.113e-61
Identity = 85/111 (76.58%), Postives = 98/111 (88.29%), Query Frame = 3
Query:  312 RVEIHIQFRHVPGNIYHESFGHNIDLATNELILRDVLDEAIPVRVNNKVPGLSLQLDASELNLLYKAKYNVEVPDSYEHLLLDVVNGDNHLFMKSDELTAAWNILNPVLQE 644
            RVEIH+QFRHVPGN+Y E+ G NIDL TNELILRD  DEAI V++NNKVPGL LQLDASELNLLYK +Y  EVPDSYEHL+ DV++GDNHLFM+SDE+ AAWNIL+PVL+E
Sbjct:  480 RVEIHVQFRHVPGNLYRENIGINIDLGTNELILRDEPDEAILVKINNKVPGLGLQLDASELNLLYKDRYKTEVPDSYEHLIHDVIDGDNHLFMRSDEVAAAWNILSPVLEE 590          

HSP 2 Score: 48.1358 bits (113), Expect = 8.113e-61
Identity = 32/70 (45.71%), Postives = 39/70 (55.71%), Query Frame = 1
Query:    1 VFRSICRLEPCNVILGHYKDTSGDKVDVKLNSLTPTYFAAACII---HWQCTLGWRAFCNKS*HGLIKHR 201
            V RSI +++P +VILG YK +S DK  V LN + PTY AAA  I    W        F  +   GLIKHR
Sbjct:  415 VLRSIRKIDPRDVILGQYKSSSRDKNGVILNGVDPTYCAAALYIDNARWDGV----PFLVRVGTGLIKHR 480          

HSP 3 Score: 47.3654 bits (111), Expect = 8.113e-61
Identity = 22/32 (68.75%), Postives = 24/32 (75.00%), Query Frame = 2
Query:  629 PSFTGIDKNNIAPELYELGGRGPVGAYYL*AK 724
            P    IDK++ APELYE GGRGPV AYYL AK
Sbjct:  586 PVLEEIDKHHTAPELYEFGGRGPVAAYYLWAK 617          
BLAST of CV712838 vs. ExPASy Swiss-Prot
Match: G6PDC_SOLTU (Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 9.567e-41
Identity = 67/111 (60.36%), Postives = 88/111 (79.28%), Query Frame = 3
Query:  312 RVEIHIQFRHVPGNIYHESFGHNIDLATNELILRDVLDEAIPVRVNNKVPGLSLQLDASELNLLYKAKYNVEVPDSYEHLLLDVVNGDNHLFMKSDELTAAWNILNPVLQE 644
            R EI +QFRHVPGN+Y  +FG ++D ATNEL+LR   DEAI +++NNKVPGL ++LD S+LNLLYKAKY  E+PD+YE LLLD + G+  LF++SDEL AAW +  P+L+E
Sbjct:  428 RAEIRVQFRHVPGNLYKRNFGTDMDKATNELVLRLQPDEAIYLKINNKVPGLGMRLDRSDLNLLYKAKYRGEIPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPLLKE 538          

HSP 2 Score: 41.9726 bits (97), Expect = 9.567e-41
Identity = 19/34 (55.88%), Postives = 23/34 (67.65%), Query Frame = 2
Query:  623 FKPSFTGIDKNNIAPELYELGGRGPVGAYYL*AK 724
            F P    +++  IAPELY  G RGPVGA+YL AK
Sbjct:  532 FTPLLKELEEKKIAPELYPYGSRGPVGAHYLAAK 565          
BLAST of CV712838 vs. ExPASy Swiss-Prot
Match: G6PD1_ARATH (Glucose-6-phosphate 1-dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=APG1 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 8.592e-39
Identity = 63/109 (57.80%), Postives = 86/109 (78.90%), Query Frame = 3
Query:  318 EIHIQFRHVPGNIYHESFGHNIDLATNELILRDVLDEAIPVRVNNKVPGLSLQLDASELNLLYKAKYNVEVPDSYEHLLLDVVNGDNHLFMKSDELTAAWNILNPVLQE 644
            EI +QFRHVPGN+Y +SF  N+D ATNEL++R   DE I +R+NNKVPGL ++LD S+LNLLY+++Y  E+PD+YE LLLD + G+  LF++SDEL AAW++  P L+E
Sbjct:  430 EIRVQFRHVPGNLYKKSFATNLDNATNELVIRVQPDEGIYLRINNKVPGLGMRLDRSDLNLLYRSRYPREIPDAYERLLLDAIEGERRLFIRSDELDAAWDLFTPALKE 538          

HSP 2 Score: 40.4318 bits (93), Expect = 8.592e-39
Identity = 17/36 (47.22%), Postives = 24/36 (66.67%), Query Frame = 2
Query:  617 EYFKPSFTGIDKNNIAPELYELGGRGPVGAYYL*AK 724
            + F P+   +++  I PELY  G RGPVGA+YL +K
Sbjct:  530 DLFTPALKELEEKKIIPELYPYGSRGPVGAHYLASK 565          
BLAST of CV712838 vs. ExPASy Swiss-Prot
Match: G6PDC_SPIOL (Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Spinacia oleracea GN=G6PD PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.458e-38
Identity = 61/111 (54.95%), Postives = 87/111 (78.38%), Query Frame = 3
Query:  312 RVEIHIQFRHVPGNIYHESFGHNIDLATNELILRDVLDEAIPVRVNNKVPGLSLQLDASELNLLYKAKYNVEVPDSYEHLLLDVVNGDNHLFMKSDELTAAWNILNPVLQE 644
            R EI +QFRHVPGN+Y ++FG ++D ATNEL+LR   DEAI +++NNKVPGL ++LD ++LNL Y  +Y  E+PD+YE LLLD + G+  LF++SD+L AAW++  P+L+E
Sbjct:  424 RAEIRVQFRHVPGNLYKKTFGTDLDKATNELVLRVQPDEAIYLKINNKVPGLGMRLDRTDLNLCYSTRYRGEIPDAYERLLLDAIEGERRLFIRSDKLDAAWSLFTPLLKE 534          

HSP 2 Score: 41.5874 bits (96), Expect = 1.458e-38
Identity = 18/34 (52.94%), Postives = 23/34 (67.65%), Query Frame = 2
Query:  623 FKPSFTGIDKNNIAPELYELGGRGPVGAYYL*AK 724
            F P    +++  +APELY  G RGPVGA+YL AK
Sbjct:  528 FTPLLKELEEKKVAPELYPYGSRGPVGAHYLAAK 561          
BLAST of CV712838 vs. ExPASy Swiss-Prot
Match: G6PDC_TOBAC (Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.200e-38
Identity = 63/109 (57.80%), Postives = 89/109 (81.65%), Query Frame = 3
Query:  318 EIHIQFRHVPGNIYHESFGHNIDLATNELILRDVLDEAIPVRVNNKVPGLSLQLDASELNLLYKAKYNVEVPDSYEHLLLDVVNGDNHLFMKSDELTAAWNILNPVLQE 644
            EI +QFRHVPGN+Y+++FG ++D ATNEL++R   +EAI +++NNKVPGL ++LD S LNLLY A+Y+ E+PD+YE LLLD + G+  LF++SDEL AAW++  PVL+E
Sbjct:  449 EIRVQFRHVPGNLYNKNFGSDLDQATNELVIRVQPNEAIYLKINNKVPGLGMRLDRSNLNLLYSARYSKEIPDAYERLLLDAIEGERRLFIRSDELDAAWSLFTPVLKE 557          

HSP 2 Score: 36.1946 bits (82), Expect = 4.200e-38
Identity = 15/34 (44.12%), Postives = 20/34 (58.82%), Query Frame = 2
Query:  623 FKPSFTGIDKNNIAPELYELGGRGPVGAYYL*AK 724
            F P    ++   I PE Y  G RGP+GA+YL A+
Sbjct:  551 FTPVLKELEDKKIVPEYYPYGSRGPIGAHYLAAR 584          
BLAST of CV712838 vs. ExPASy Swiss-Prot
Match: G6PD2_ARATH (Glucose-6-phosphate 1-dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=At5g13110 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 2.674e-37
Identity = 62/109 (56.88%), Postives = 87/109 (79.82%), Query Frame = 3
Query:  318 EIHIQFRHVPGNIYHESFGHNIDLATNELILRDVLDEAIPVRVNNKVPGLSLQLDASELNLLYKAKYNVEVPDSYEHLLLDVVNGDNHLFMKSDELTAAWNILNPVLQE 644
            EI +QFRHVPGN+Y+ + G ++D ATNEL++R   DEAI +++NNKVPGL ++LD S LNLLY A+Y+ E+PD+YE LLLD + G+  LF++SDEL AAW++  P+L+E
Sbjct:  449 EIRVQFRHVPGNLYNRNTGSDLDQATNELVIRVQPDEAIYLKINNKVPGLGMRLDRSNLNLLYSARYSKEIPDAYERLLLDAIEGERRLFIRSDELDAAWSLFTPLLKE 557          

HSP 2 Score: 36.1946 bits (82), Expect = 2.674e-37
Identity = 17/34 (50.00%), Postives = 20/34 (58.82%), Query Frame = 2
Query:  623 FKPSFTGIDKNNIAPELYELGGRGPVGAYYL*AK 724
            F P    I++    PE Y  G RGPVGA+YL AK
Sbjct:  551 FTPLLKEIEEKKRIPEYYPYGSRGPVGAHYLAAK 584          
BLAST of CV712838 vs. ExPASy Swiss-Prot
Match: G6PD3_ARATH (Glucose-6-phosphate 1-dehydrogenase 3, chloroplastic OS=Arabidopsis thaliana GN=At1g24280 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.888e-36
Identity = 61/109 (55.96%), Postives = 84/109 (77.06%), Query Frame = 3
Query:  318 EIHIQFRHVPGNIYHESFGHNIDLATNELILRDVLDEAIPVRVNNKVPGLSLQLDASELNLLYKAKYNVEVPDSYEHLLLDVVNGDNHLFMKSDELTAAWNILNPVLQE 644
            EI +QFRHVPGN+Y+ + G + D  TNEL++R   DEAI +++NNKVPGL ++LD S LNLLY A+Y+ E+PD+YE LLLD + G+  LF++SDEL AAW +  P+L+E
Sbjct:  452 EIRVQFRHVPGNLYNRNSGTDRDQTTNELVIRVQPDEAIYLKINNKVPGLGMRLDQSNLNLLYSARYSKEIPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPLLKE 560          

HSP 2 Score: 37.7354 bits (86), Expect = 2.888e-36
Identity = 17/34 (50.00%), Postives = 20/34 (58.82%), Query Frame = 2
Query:  623 FKPSFTGIDKNNIAPELYELGGRGPVGAYYL*AK 724
            F P    I++    PE Y  G RGPVGA+YL AK
Sbjct:  554 FTPLLKEIEEKKTTPEFYPYGSRGPVGAHYLAAK 587          
BLAST of CV712838 vs. ExPASy Swiss-Prot
Match: G6PD_DICDI (Glucose-6-phosphate 1-dehydrogenase OS=Dictyostelium discoideum GN=g6pd-1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.617e-18
Identity = 39/112 (34.82%), Postives = 74/112 (66.07%), Query Frame = 3
Query:  312 RVEIHIQFRHVPGNIYHESFGHNIDLATNELILRDVLDEAIPVRVNNKVPGLSLQLDASELNLLYKAKY-NVEVPDSYEHLLLDVVNGDNHLFMKSDELTAAWNILNPVLQE 644
            + E+ IQF+     ++ +      D++ NEL++R    EA+ +++ +K PGL  +++ +EL+L Y+ ++ N+++PD+YE L+LD + GD++LF++ DEL  AW I  P+L +
Sbjct:  343 KTEVRIQFKRPDNFLFSDD-----DISRNELVMRIQPGEAVYLKLLSKKPGLENKIEQTELDLSYRHRFENLDLPDAYERLILDSIKGDHNLFVRDDELDVAWQIFTPLLDQ 449          

HSP 2 Score: 29.261 bits (64), Expect = 1.617e-18
Identity = 13/30 (43.33%), Postives = 15/30 (50.00%), Query Frame = 2
Query:  617 EYFKPSFTGIDKNNIAPELYELGGRGPVGA 706
            + F P    I+K  I PE Y  G RGP  A
Sbjct:  441 QIFTPLLDQIEKEKIKPEPYSFGSRGPKSA 470          
BLAST of CV712838 vs. ExPASy Swiss-Prot
Match: G6PD5_ARATH (Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=ACG9 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.899e-17
Identity = 44/110 (40.00%), Postives = 68/110 (61.82%), Query Frame = 3
Query:  312 RVEIHIQFRHVPGNIYHESFGHNIDLATNELILRDVLDEAIPVRVNNKVPGLSLQLDASELNLLYKAKY-NVEVPDSYEHLLLDVVNGDNHLFMKSDELTAAWNILNPVL 638
            + +I IQF+ VPG+I+        +   NE ++R    EA+ +++  K PGL +Q   SEL+L YK +Y +V +P++YE L+LD + GD   F++ DEL AAW I  P+L
Sbjct:  367 KADIRIQFKDVPGDIFKCQ-----NQGRNEFVIRLQPSEAMYMKLTVKQPGLEMQTVQSELDLSYKQRYQDVSIPEAYERLILDTIRGDQQHFVRRDELKAAWEIFTPLL 471          

HSP 2 Score: 25.0238 bits (53), Expect = 2.899e-17
Identity = 12/30 (40.00%), Postives = 14/30 (46.67%), Query Frame = 2
Query:  617 EYFKPSFTGIDKNNIAPELYELGGRGPVGA 706
            E F P    IDK  +    Y+ G RGP  A
Sbjct:  465 EIFTPLLHRIDKGEVKSVPYKQGSRGPAEA 494          
BLAST of CV712838 vs. ExPASy Swiss-Prot
Match: G6PD_ASPNG (Glucose-6-phosphate 1-dehydrogenase OS=Aspergillus niger GN=gsdA PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.873e-17
Identity = 42/110 (38.18%), Postives = 74/110 (67.27%), Query Frame = 3
Query:  312 RVEIHIQFRHVPGNIYHESFGHNIDLATNELILRDVLDEAIPVRVNNKVPGLSLQLDASELNLLYKAKYN-VEVPDSYEHLLLDVVNGDNHLFMKSDELTAAWNILNPVL 638
            + EI IQFR V   I+        D+  NEL++R   +E++ +++N+K+PGLS+Q   +EL+L Y+ +++ +++P++YE L+LD + GD+  F++ DEL A+W I  P+L
Sbjct:  356 KTEIRIQFRDVTSGIFK-------DIPRNELVIRVQPNESVYIKMNSKLPGLSMQTVVTELDLTYRRRFSDLKIPEAYESLILDALKGDHSNFVRDDELDASWRIFTPLL 458          
The following BLAST results are available for this feature:
BLAST of CV712838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
G6PD4_ARATH8.113e-6176.58Glucose-6-phosphate 1-dehydrogenase 4, chloroplast... [more]
G6PDC_SOLTU9.567e-4160.36Glucose-6-phosphate 1-dehydrogenase, chloroplastic... [more]
G6PD1_ARATH8.592e-3957.80Glucose-6-phosphate 1-dehydrogenase 1, chloroplast... [more]
G6PDC_SPIOL1.458e-3854.95Glucose-6-phosphate 1-dehydrogenase, chloroplastic... [more]
G6PDC_TOBAC4.200e-3857.80Glucose-6-phosphate 1-dehydrogenase, chloroplastic... [more]
G6PD2_ARATH2.674e-3756.88Glucose-6-phosphate 1-dehydrogenase 2, chloroplast... [more]
G6PD3_ARATH2.888e-3655.96Glucose-6-phosphate 1-dehydrogenase 3, chloroplast... [more]
G6PD_DICDI1.617e-1834.82Glucose-6-phosphate 1-dehydrogenase OS=Dictyosteli... [more]
G6PD5_ARATH2.899e-1740.00Glucose-6-phosphate 1-dehydrogenase, cytoplasmic i... [more]
G6PD_ASPNG4.873e-1738.18Glucose-6-phosphate 1-dehydrogenase OS=Aspergillus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001P12_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712838 ID=CV712838; Name=CV712838; organism=Citrus sinensis; type=EST; length=725bp
GTTTTTAGGTCAATCTGCAGATTGGAGCCATGCAATGTCATTCTTGGCCA
TTATAAAGATACTTCTGGTGACAAGGTTGATGTTAAATTGAACAGCCTGA
CCCCCACATATTTTGCTGCTGCATGCATTATACATTGGCAATGCACGTTG
GGATGGCGTGCCTTTTGTAATAAAAGCTAGCATGGGCTAATCAAACACAG
GTAATAGCTATTTCAGTTTTGCTGTTTATGCCTTAATAGACATTTTCGTG
GTTTGTACATTGCCAGATTATGATAGGAACCTAGAGCACACCCTTAAAAA
GATGGCTTGTGAGAGTGGAGATACATATACAGTTTCGACATGTTCCGGGG
AACATCTATCATGAAAGTTTTGGGCATAACATCGACCTTGCCACAAATGA
ACTAATATTACGCGATGTGCTTGATGAGGCCATTCCAGTCAGAGTCAACA
ATAAAGTTCCAGGATTAAGCTTGCAATTGGATGCTTCGGAGCTTAATTTG
CTCTATAAGGCTAAGTATAACGTGGAGGTGCCTGATTCATACGAACATCT
TCTTCTTGATGTTGTCAATGGCGACAACCATCTCTTCATGAAAAGCGATG
AGCTTACTGCTGCATGGAATATTTTAAACCCAGTTTTACAGGAATAGACA
AGAACAATATTGCACCAGAACTTTATGAGCTGGGTGGTAGAGGTCCCGTT
GGAGCATATTATCTTTAGGCGAAAC
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