CV712830

Overview
NameCV712830
Unique NameCV712830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13190 contig Csv1_Contig13190:633..1161. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712830 vs. ExPASy Swiss-Prot
Match: PSB5A_ARATH (Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.086e-34
Identity = 67/88 (76.14%), Postives = 71/88 (80.68%), Query Frame = 2
Query:    2 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTPSTVEQEMAE 265
            FSVGSGSPYAYGVLDSGYK+DMS+          IYHATFRD ASGGVASVY+VGP GW KLSGDDVGELHYHYYPV P+T EQ M E
Sbjct:  183 FSVGSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPEGWTKLSGDDVGELHYHYYPVAPATAEQVMEE 270          
BLAST of CV712830 vs. ExPASy Swiss-Prot
Match: PSB5_SPIOL (Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.031e-34
Identity = 64/92 (69.57%), Postives = 76/92 (82.61%), Query Frame = 2
Query:    2 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTPSTVEQEMAEVAGA 277
            FSVGSGSPYAYGVLD+GYK+DM++          IYHAT+RD ASGGV SVY+VGP+GWKK++GDDVG+LH+ YYPV P+TVEQEM EV GA
Sbjct:  181 FSVGSGSPYAYGVLDNGYKYDMTVEEASELARRAIYHATYRDGASGGVVSVYHVGPDGWKKVTGDDVGDLHFQYYPVVPATVEQEMVEVVGA 272          
BLAST of CV712830 vs. ExPASy Swiss-Prot
Match: PSB5B_ARATH (Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.031e-34
Identity = 68/90 (75.56%), Postives = 70/90 (77.78%), Query Frame = 2
Query:    2 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTPSTVEQEMAEVA 271
            FSVGSGSPYAYGVLDSGYKFDMS+          IYHATFRD ASGGVASVY+VGP GW KLSGDDVGELHYHYYPV P T E  M E A
Sbjct:  183 FSVGSGSPYAYGVLDSGYKFDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPQGWTKLSGDDVGELHYHYYPVAPITAEHVMEEAA 272          
BLAST of CV712830 vs. ExPASy Swiss-Prot
Match: PSB5_DICDI (Proteasome subunit beta type-5 OS=Dictyostelium discoideum GN=psmB5 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.539e-17
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 2
Query:    2 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTP 238
            FS GSGS YAYGVLD+G+K+DM+           +YHAT RDA SGG  +VY+V  +GWKK+S DD  +L+  YY + P
Sbjct:  188 FSCGSGSTYAYGVLDTGFKWDMNDEEAYELGRRAVYHATHRDAYSGGAINVYHVQKDGWKKISSDDCFKLYQKYYNIVP 266          
BLAST of CV712830 vs. ExPASy Swiss-Prot
Match: PSB5_PONAB (Proteasome subunit beta type-5 OS=Pongo abelii GN=PSMB5 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 2
Query:    2 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTP 238
            FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V +LH  Y   TP
Sbjct:  185 FSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP 263          
BLAST of CV712830 vs. ExPASy Swiss-Prot
Match: PSB5_HUMAN (Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 2
Query:    2 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTP 238
            FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V +LH  Y   TP
Sbjct:  185 FSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP 263          
BLAST of CV712830 vs. ExPASy Swiss-Prot
Match: PSB5_MOUSE (Proteasome subunit beta type-5 OS=Mus musculus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 2.457e-15
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 2
Query:    2 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVT 235
            FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V +LH  Y  V+
Sbjct:  185 FSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHDKYSSVS 262          
BLAST of CV712830 vs. ExPASy Swiss-Prot
Match: PSB5_BOVIN (Proteasome subunit beta type-5 OS=Bos taurus GN=PSMB5 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.209e-15
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 2
Query:    2 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHY 223
            FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  S+Y+V  +GW ++S D+V +LH  Y
Sbjct:  185 FSVGSGSVYAYGVMDRGYSYDLEVEEAYDLARRAIYQATYRDAYSGGSVSLYHVREDGWIRVSSDNVADLHDKY 258          
BLAST of CV712830 vs. ExPASy Swiss-Prot
Match: PSB5_RAT (Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 9.336e-15
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 2
Query:    2 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTP 238
            FSVGSGS YA+GV+D GY +D+ +          IY AT+RDA SGG  ++Y+V  +GW ++S D+V +LH  Y    P
Sbjct:  185 FSVGSGSVYAFGVMDRGYSYDLQVEEAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHDKYTSSIP 263          
BLAST of CV712830 vs. ExPASy Swiss-Prot
Match: PSB5_CHICK (Proteasome subunit beta type-5 (Fragment) OS=Gallus gallus GN=PSMB5 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.761e-13
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 2
Query:    2 FSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHY 223
            F+VGSGS YAYGVLD G + DM+           I+ A  RDA SGG  +VY+VGP GW+++S  DV  LH  Y
Sbjct:  181 FAVGSGSSYAYGVLDGGRRPDMATDEALELARRAIFQAARRDAYSGGSVTVYHVGPRGWRRVSSHDVAGLHDGY 254          
The following BLAST results are available for this feature:
BLAST of CV712830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PSB5A_ARATH3.086e-3476.14Proteasome subunit beta type-5-A OS=Arabidopsis th... [more]
PSB5_SPIOL4.031e-3469.57Proteasome subunit beta type-5 OS=Spinacia olerace... [more]
PSB5B_ARATH4.031e-3475.56Proteasome subunit beta type-5-B OS=Arabidopsis th... [more]
PSB5_DICDI1.539e-1751.90Proteasome subunit beta type-5 OS=Dictyostelium di... [more]
PSB5_PONAB6.465e-1648.10Proteasome subunit beta type-5 OS=Pongo abelii GN=... [more]
PSB5_HUMAN6.465e-1648.10Proteasome subunit beta type-5 OS=Homo sapiens GN=... [more]
PSB5_MOUSE2.457e-1547.44Proteasome subunit beta type-5 OS=Mus musculus GN=... [more]
PSB5_BOVIN3.209e-1550.00Proteasome subunit beta type-5 OS=Bos taurus GN=PS... [more]
PSB5_RAT9.336e-1545.57Proteasome subunit beta type-5 OS=Rattus norvegicu... [more]
PSB5_CHICK1.761e-1350.00Proteasome subunit beta type-5 (Fragment) OS=Gallu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001P07_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712830 ID=CV712830; Name=CV712830; organism=Citrus sinensis; type=EST; length=529bp
GTTCTCTGTGGGATCAGGTTCACCATATGCTTATGGTGTATTGGACAGCG
GGTACAAGTTTGACATGTCTATTGAAGAAGCTGCGGAGTTGGCTAGAAGA
GCTATTTATCATGCGACATTCAGAGATGCAGCCAGTGGTGGTGTTGCAAG
CGTTTATTATGTGGGACCAAATGGATGGAAGAAGCTGTCTGGTGATGATG
TTGGAGAGCTTCACTACCATTATTATCCAGTCACACCCAGTACAGTGGAG
CAAGAAATGGCTGAAGTCGCAGGGGCATAATTGAGTCTTGCTCAATTTGG
ACCAGGTTTGAGATATTCCTCATATTCACAGATCCAGTGGAGGACTTTAC
GGATATGCTTCTGAACTTTGTCAATGTACCTTGGGTTGATCCCAGAGATG
ACTCGTGAATTCAACCTAGTTAAGTTGATGCTTTAAGAACCCTGCATTTT
CTTTTGGTATTTTCATTATGACAAGTACAGTTCTATTTTCTATTAAGCAG
TTTGTTATAGTAATTTAGTTCCTGAGATT
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