CV712805

Overview
NameCV712805
Unique NameCV712805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2482 contig Csv1_Contig2482:15..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712805 vs. ExPASy Swiss-Prot
Match: AGD8_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana GN=AGD8 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.332e-60
Identity = 115/168 (68.45%), Postives = 145/168 (86.31%), Query Frame = -1
Query:  305 FASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKSGS--SKVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL 802
            FASRFEY D++QS   S GG QVL+HVAPPKSSSFF+D+GMD+ F KKS S  SK Q++E+DEARKKF+NAKSISS+Q+FGDQN + D++++ +LQKF+GSASISSAD +GHD D++++D+ ASDLINRLSFQAQQD+SSL NIAGET KKL +LAS + +DIQDR+L
Sbjct:  246 FASRFEYNDDLQSGGQSVGGTQVLNHVAPPKSSSFFSDFGMDSSFPKKSSSNSSKSQVEESDEARKKFTNAKSISSAQYFGDQNKNADLESKATLQKFAGSASISSADFYGHDQDDSNIDITASDLINRLSFQAQQDLSSLVNIAGETKKKLGTLASGIFSDIQDRML 413          
BLAST of CV712805 vs. ExPASy Swiss-Prot
Match: AGD9_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana GN=AGD9 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.479e-55
Identity = 109/168 (64.88%), Postives = 139/168 (82.74%), Query Frame = -1
Query:  305 FASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKSGSS--KVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDRIL 802
            FASRFEY D+ QS   S  G +VLSHVAPPKSS+FF ++GMD+ F KKS SS  K Q++ETDEARKKFSNAKSISS+QFFG+QN   D+D++ +LQKFSGSA+ISS+DLFGH  D++++D+ ASDLINR+SFQAQQD+SS+ N+A ET  KL + ASS+ +D+QDR+L
Sbjct:  237 FASRFEYFDDEQSGGQS--GTRVLSHVAPPKSSNFFNEFGMDSAFPKKSSSSSSKAQVEETDEARKKFSNAKSISSAQFFGNQNRDADLDSKATLQKFSGSAAISSSDLFGHGPDDSNIDITASDLINRISFQAQQDMSSIANLAEETKNKLGTFASSIFSDLQDRML 402          
BLAST of CV712805 vs. ExPASy Swiss-Prot
Match: AGD10_ARATH (ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana GN=AGD10 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.107e-47
Identity = 106/161 (65.84%), Postives = 127/161 (78.88%), Query Frame = -1
Query:  332 FASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNG--FQKK--SGSSKVQIQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSL 802
            F+SRF+Y DNVQ+ E     PQV+SHVAPPKSS FF +    NG  FQKK  + SSK+QIQETDEARKKF+NAKSISS+Q+FG+ NNS D++ + SL+KFSGS++ISSADLFG    +  LDL A DL+NRLS QAQQDISSLKN+A ET KKL S+ASSL
Sbjct:  234 FSSRFDYADNVQNRE-DYMSPQVVSHVAPPKSSGFFEEELEMNGGRFQKKPITSSSKLQIQETDEARKKFTNAKSISSAQYFGNDNNSADLEAKSSLKKFSGSSAISSADLFGDGDGDFPLDLTAGDLLNRLSLQAQQDISSLKNMAEETKKKLGSVASSL 393          
BLAST of CV712805 vs. ExPASy Swiss-Prot
Match: ARFG3_PONAB (ADP-ribosylation factor GTPase-activating protein 3 OS=Pongo abelii GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.492e-12
Identity = 43/109 (39.45%), Postives = 66/109 (60.55%), Query Frame = -1
Query:  311 IQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDR 637
            ++ TDEA+KKF N K+ISS  +FG Q  + D +T+  L++ S S+SISSADLF      A+ + + S ++      AQ     ++++AG    KLS  A+ ++T IQDR
Sbjct:  411 VENTDEAQKKFGNVKAISSDMYFGRQAQA-DYETRARLERLSASSSISSADLFEEQRKQAAGNYSLSSVLPNAPDMAQFK-QGVRSVAG----KLSVFANGVVTSIQDR 513          
BLAST of CV712805 vs. ExPASy Swiss-Prot
Match: ARFG3_MACFA (ADP-ribosylation factor GTPase-activating protein 3 OS=Macaca fascicularis GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.492e-12
Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  311 IQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDR 637
            ++ TDEA+KKF N K+ISS  +FG Q  + D +T+  L++ S S+SISSADLF      A+ + + S+++      AQ     ++++AG    KLS  A+ ++T IQDR
Sbjct:  411 VENTDEAQKKFGNVKAISSDMYFGRQAQA-DYETRARLERLSASSSISSADLFEEQRKQAAGNYSLSNVLPSAPNMAQFK-QGVRSVAG----KLSVFANGVVTSIQDR 513          
BLAST of CV712805 vs. ExPASy Swiss-Prot
Match: ARFG3_HUMAN (ADP-ribosylation factor GTPase-activating protein 3 OS=Homo sapiens GN=ARFGAP3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.669e-11
Identity = 42/109 (38.53%), Postives = 66/109 (60.55%), Query Frame = -1
Query:  311 IQETDEARKKFSNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLITDIQDR 637
            ++ TDEA+KKF N K+ISS  +FG Q+ + D +T+  L++ S S+SISSADLF       + + + S ++      AQ     ++++AG    KLS  A+ ++T IQDR
Sbjct:  411 VENTDEAQKKFGNVKAISSDMYFGRQSQA-DYETRARLERLSASSSISSADLFEEPRKQPAGNYSLSSVLPNAPDMAQFK-QGVRSVAG----KLSVFANGVVTSIQDR 513          
The following BLAST results are available for this feature:
BLAST of CV712805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AGD8_ARATH4.332e-6068.45Probable ADP-ribosylation factor GTPase-activating... [more]
AGD9_ARATH5.479e-5564.88Probable ADP-ribosylation factor GTPase-activating... [more]
AGD10_ARATH1.107e-4765.84ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_PONAB7.492e-1239.45ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_MACFA7.492e-1239.45ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_HUMAN1.669e-1138.53ADP-ribosylation factor GTPase-activating protein ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001O18_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001O18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712805 ID=CV712805; Name=CV712805; organism=Citrus sinensis; type=EST; length=811bp
TTTTTTTTGGCCCAGCGCTACAAATATTATATTTATATATATTTGTATAG
GTTCCTTGGTTTACAACGAAGCCACGAAGGTACATAATATTGAATCGATT
CACTAAATGAAAGGCACATGAAACTAGTCTCAAAACAAACACTGCTGAAA
CCACAATAAAAAGCCCAGTCGGTAGTATGCCAGCAGAATTCTAAAATTTT
ATTTGTCTTCCAAAAGAATTTTATGATCAAACTCATTTTACATTTCCTAC
ACAAGATGTAGGCTGGTAAATGTAACAAACTCCAGACATATTCGAAGATT
TTCAGAGTATTCTGTCTTGAATATCTGTTATCAGACTTGACGCCAAGGAG
CTAAGTTTCTTTCCAGTCTCTCCCGCAATGTTCTTCAGAGAAGAGATATC
TTGTTGTGCCTGGAATGAGAGTCTGTTGATGAGGTCACTAGCAGCAAGAT
CAAGTGAGGCATTGTCAGAGTCATGACCAAACAGATCAGCACTAGAGATC
GATGCTGAACCTGAGAACTTTTGCAAAGAAACTTGAGTATCCATGTCAAT
AGAGTTGTTCTGATCCCCAAAAAATTGGGATGATGAAATAGATTTTGCAT
TAGAGAACTTCTTCCTTGCTTCATCAGTTTCTTGAATTTGTACTTTTGAG
GAGCCGGACTTCTTTTGAAAACCATTGTCCATTCCATAATCAGCAAAGAA
GCTTGACGACTTTGGTGGAGCTACATGGCTAAGCACTTGTGGACCACCAG
AACTCAACTCGGAAGATTGGACATTATCCACATACTCAAAGCGAGAAGCA
AAGGGCAAACT
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