CV712762

Overview
NameCV712762
Unique NameCV712762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11152 contig Csv1_Contig11152:155..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV712762 vs. ExPASy Swiss-Prot
Match: STR16_ARATH (Thiosulfate sulfurtransferase OS=Arabidopsis thaliana GN=STR16 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.804e-24
Identity = 58/113 (51.33%), Postives = 73/113 (64.60%), Query Frame = 1 
Query:  178 TVDVRAAKNLLESGYGYLDVRTAEEFEEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 516
            +V V  A +LL +G+ YLDVRT EEF +GH   A   N+PYM     G  KNPDFL++V S   + D ++VGCQSG RS+ AT DLL AGF  V +  GG+ AW +NGL  KA
Sbjct:   10 SVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGA--INVPYMNRGASGMSKNPDFLEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA 120
[Close]
BLAST of CV712762 vs. ExPASy Swiss-Prot
Match: DIN1_RAPSA (Senescence-associated protein DIN1 OS=Raphanus sativus GN=DIN1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.443e-23
Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:  178 TVDVRAAKNLLESGYGYLDVRTAEEFEEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 513
            +V VR A+ L ++GY +LDVRT +EF  GH   A   N+PYM+    G VKNP FL++V S  ++ D +++GC+SG RSL A+ +LL AGF  V++  GG++ W +N L V+
Sbjct:   73 SVPVRVARELAQAGYKHLDVRTPDEFSIGHPSRA--INVPYMYRVGSGMVKNPSFLRQVSSHFRKHDEIIIGCESGERSLMASTELLTAGFTGVTDIAGGYVPWTENELPVE 182
The following BLAST results are available for this feature:
BLAST of CV712762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
STR16_ARATH1.804e-2451.33Thiosulfate sulfurtransferase OS=Arabidopsis thali... [more]
DIN1_RAPSA4.443e-2345.54Senescence-associated protein DIN1 OS=Raphanus sat... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001N20_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001N20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712762 ID=CV712762; Name=CV712762; organism=Citrus sinensis; type=EST; length=715bp
CTAATTTTAATTTCGTTCACGTTAATATATTAATATCGGAACATACCTTC
AGCCTTCAGGGATATTCAAATATAACTTTGTAAGTTTGATATGGGTGTTT
CCCGCAATTGGGTCACGTTTTTGCGTGGATTGTTTCTCCTCCTCCTTATC
TGTCGTAGCTCTGGAGCTGAAGTTATTACAGTTGATGTTCGAGCTGCTAA
GAATCTGCTTGAATCTGGCTACGGCTATCTTGATGTGAGGACGGCAGAAG
AATTCGAGGAAGGTCATGTGGATGCAGCAAAAATCTTCAACATTCCTTAC
ATGTTCAACACTCCAGAAGGTAGAGTAAAAAATCCAGATTTCTTGAAGAA
GGTTAGATCTCTTTGCAAGGAGGAGGATCGTCTTGTAGTGGGCTGTCAAA
GCGGAGCTAGATCTCTTCATGCAACGGCTGATCTTCTTGGCGCTGGCTTT
AAGCATGTTAGCAACTTTGGAGGTGGGCATATGGCTTGGGTTCAGAACGG
ATTAAAGGTGAAGGCGCATGAAAAGCCAGCAGATCATCGATCTGACCTCT
GATTAATCATGACTTGCCATTATTATCACCATGTATTACGCACACTAGTA
ATGCCCAGAAAACGAACTTGTGGTGGCGCCGTCGTATTTAGTAATTTGTA
CAATATTTTTATTTTTGTTCGTTTGTTGCAGAAAATGATGGGAATTTGAT
TAAAGTTAAAAAAAA
back to top