CV712709

Overview
NameCV712709
Unique NameCV712709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length447
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6913 contig Csv1_Contig6913:12..457. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: R27A2_ARATH (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.694e-41
Identity = 80/93 (86.02%), Postives = 89/93 (95.70%), Query Frame = -1
Query:  169 GKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 447
            GKVGMRYFHKLRNKF CPIVN+DKLWS+VP++VKAK+SKDNVP+IDVTQ G+FKVLGKG LPEN+P VVKAKL+SKTAEKKIKEAGGAVVLTA
Sbjct:   54 GKVGMRYFHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146          
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: R27A3_ARATH (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.773e-41
Identity = 79/93 (84.95%), Postives = 89/93 (95.70%), Query Frame = -1
Query:  169 GKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 447
            GKVGMRYFHKLRNKF CPIVN+DKLWS+VP++VKAK++KDNVP+IDVTQ G+FKVLGKG LPEN+P VVKAKL+SKTAEKKIKEAGGAVVLTA
Sbjct:   54 GKVGMRYFHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146          
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: RL27A_TETTH (60S ribosomal protein L27a OS=Tetrahymena thermophila GN=RPL27A PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 7.638e-26
Identity = 59/95 (62.11%), Postives = 72/95 (75.79%), Query Frame = -1
Query:  169 GKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKD--NVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 447
            GK+GMR FH  +N  HCP+VN+DKLWS+V    + K ++D   VP+IDVT+ G+FKVLGKG LP NQPVVVKAK  SKTAE++I   GGA VLTA
Sbjct:   56 GKLGMRTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLP-NQPVVVKAKYFSKTAERRIVAVGGACVLTA 149          
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: RL27A_OSCBR (60S ribosomal protein L27a OS=Oscheius brevesophaga GN=rpl-27a PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.702e-25
Identity = 55/93 (59.14%), Postives = 69/93 (74.19%), Query Frame = -1
Query:  169 GKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 447
            GKVGMR FH  +N  +CP VNVD+LW++VP+E K K S +  P+ID  + GYFKVLGKG+LP+ QP++VKAK  S  AE KIK AGGA +L A
Sbjct:   54 GKVGMRVFHLNKNHHYCPTVNVDRLWALVPEEQKTKVSAEKAPVIDCVKAGYFKVLGKGLLPK-QPLIVKAKFFSHEAENKIKAAGGACILVA 145          
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: RL27A_DICDI (60S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.791e-25
Identity = 52/96 (54.17%), Postives = 73/96 (76.04%), Query Frame = -1
Query:  169 GKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 447
            GK+GMR+FH LRN++HCP V+++K+W++VP+ V+   +  N    P++DVTQ G+FKVLG G+LP  QP++VKA+  SK AEKKIK  GGA +L A
Sbjct:   54 GKLGMRHFHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILP-TQPIIVKARYFSKVAEKKIKAVGGACILVA 148          
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: RL27A_EUPCR (60S ribosomal protein L27a OS=Euplotes crassus GN=RPL27A PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.191e-24
Identity = 55/95 (57.89%), Postives = 73/95 (76.84%), Query Frame = -1
Query:  169 GKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQE--VKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 447
            GK GMR+FH +RN+++CP +N+ KLWS+V +E   KA+  K  V +IDV + GY+KVLGKG+LPE  P+VVKAKL + TAEK+IK+ GGA VL A
Sbjct:   54 GKHGMRHFHLMRNQYYCPSINLSKLWSLVTEEERQKAQTDKSKVILIDVVKHGYYKVLGKGLLPE-VPLVVKAKLFTPTAEKRIKQVGGACVLRA 147          
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: RL27A_RAT (60S ribosomal protein L27a OS=Rattus norvegicus GN=Rpl27a PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 4.634e-23
Identity = 53/96 (55.21%), Postives = 71/96 (73.96%), Query Frame = -1
Query:  169 GKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 447
            GKVGMR++H  RN+  CP VN+DKLW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   54 GKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148          
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: RL27A_MACFA (60S ribosomal protein L27a OS=Macaca fascicularis GN=RPL27A PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.634e-23
Identity = 53/96 (55.21%), Postives = 71/96 (73.96%), Query Frame = -1
Query:  169 GKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 447
            GKVGMR++H  RN+  CP VN+DKLW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   54 GKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148          
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: RL27A_BOVIN (60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 4.634e-23
Identity = 53/96 (55.21%), Postives = 71/96 (73.96%), Query Frame = -1
Query:  169 GKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 447
            GKVGMR++H  RN+  CP VN+DKLW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   54 GKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148          
BLAST of CV712709 vs. ExPASy Swiss-Prot
Match: RL27A_PONAB (60S ribosomal protein L27a OS=Pongo abelii GN=RPL27A PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 6.052e-23
Identity = 52/96 (54.17%), Postives = 71/96 (73.96%), Query Frame = -1
Query:  169 GKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 447
            GKVGM+++H  RN+  CP VN+DKLW++V ++ +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   54 GKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148          
The following BLAST results are available for this feature:
BLAST of CV712709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
R27A2_ARATH1.694e-4186.0260S ribosomal protein L27a-2 OS=Arabidopsis thalia... [more]
R27A3_ARATH3.773e-4184.9560S ribosomal protein L27a-3 OS=Arabidopsis thalia... [more]
RL27A_TETTH7.638e-2662.1160S ribosomal protein L27a OS=Tetrahymena thermoph... [more]
RL27A_OSCBR1.702e-2559.1460S ribosomal protein L27a OS=Oscheius brevesophag... [more]
RL27A_DICDI3.791e-2554.1760S ribosomal protein L27a OS=Dictyostelium discoi... [more]
RL27A_EUPCR4.191e-2457.8960S ribosomal protein L27a OS=Euplotes crassus GN=... [more]
RL27A_RAT4.634e-2355.2160S ribosomal protein L27a OS=Rattus norvegicus GN... [more]
RL27A_MACFA4.634e-2355.2160S ribosomal protein L27a OS=Macaca fascicularis ... [more]
RL27A_BOVIN4.634e-2355.2160S ribosomal protein L27a OS=Bos taurus GN=RPL27A... [more]
RL27A_PONAB6.052e-2354.1760S ribosomal protein L27a OS=Pongo abelii GN=RPL2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001M17_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712709 ID=CV712709; Name=CV712709; organism=Citrus sinensis; type=EST; length=447bp
GGGGGGGGGGCCCCCTTTTTTTTATCAATAACAGGGTCTCTATATAAAGC
AAAAAGTTTCAAATGATAACATAAACATCCAAAACTACATGTAAAAATAG
TCAAATACTCAAAAACTGAAATCCAAAATATCACAAAAAAATTTCTAAAA
ACAATAACAGTAAACCTAAGCAGTAAGCACAACAGCCCCACCAGCTTCTT
TAATTTTCTTCTCGGCTGTCTTGGAAACAAGCTTGGCCTTCACCACAACG
GGTTGGTTCTCAGGCAAAACGCCCTTACCCAAAACCTTAAAGTAGCCAAA
CTGAGTCACATCGATCATTGGCACATTGTCTTTGGAAGCCTTGGCTTTGA
CCTCCTGAGGTACCATCGACCAAAGCTTGTCGACGTTCACAATTGGGCAA
TGAAATTTATTACGCAGTTTGTGGAAGTACCTCATACCGACTTTGCC
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