CV712684

Overview
NameCV712684
Unique NameCV712684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6698 contig Csv1_Contig6698:1455..2200. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_CITSI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Citrus sinensis GN=ndhD PE=3 SV=1)

HSP 1 Score: 462.225 bits (1188), Expect = 1.310e-129
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFFL 715
            IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFFL
Sbjct:  262 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFFL 499          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_VITVI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Vitis vinifera GN=ndhD PE=3 SV=1)

HSP 1 Score: 428.713 bits (1101), Expect = 1.605e-119
Identity = 214/237 (90.30%), Postives = 226/237 (95.36%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            +RINMELLPHAHSIFSPW ++VGT+QIIYAASTS GQRNLKKRIAYSSVSHMGFII+GIGSITDTGLNGA+LQIISHG + AALFFLAGTSYDRIR  YLDEMGG+AIP+PKIFT+FSILSMASLALPGMSGFVAELIVFFGIITSQKF LMPKI+ITFVMAIGMILTPIYSLSM RQMFYGYKLFNAPNSYFFDSGPRELFVLISI LPVIGIGIYPDFVLSLS DK EAI+SNFF
Sbjct:  262 VRINMELLPHAHSIFSPWLVVVGTMQIIYAASTSSGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFLGAALFFLAGTSYDRIRLIYLDEMGGIAIPMPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKFLLMPKILITFVMAIGMILTPIYSLSMSRQMFYGYKLFNAPNSYFFDSGPRELFVLISIFLPVIGIGIYPDFVLSLSVDKVEAILSNFF 498          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_PANGI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Panax ginseng GN=ndhD PE=3 SV=1)

HSP 1 Score: 422.165 bits (1084), Expect = 1.502e-117
Identity = 210/237 (88.61%), Postives = 223/237 (94.09%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            IRINMELLPHAHSIFSPW +IVGT+QIIYAASTSPGQRNLKKRIAYSSVSHMGFI++GIGSITDTGLNGA+LQIISHG I AALFFLAGTSYDRIR  YLDEMGG+AIP+PKIFT+F+  SMASLALPGMSGFVAELIVFFGIITSQK+ LMPKI+ITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSY FDSGPRELFV ISI LPVIGIG+YPDFVLSLS DK E I+SNFF
Sbjct:  262 IRINMELLPHAHSIFSPWLVIVGTIQIIYAASTSPGQRNLKKRIAYSSVSHMGFILIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFTSFSMASLALPGMSGFVAELIVFFGIITSQKYLLMPKILITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYVFDSGPRELFVSISIFLPVIGIGMYPDFVLSLSVDKVEVILSNFF 498          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_PLAOC (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Platanus occidentalis GN=ndhD PE=3 SV=1)

HSP 1 Score: 420.624 bits (1080), Expect = 4.371e-117
Identity = 211/237 (89.03%), Postives = 221/237 (93.25%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            +RINMELLPHAHSIFSPW MIVGT+QIIYAASTSPGQRNLKKRIAYSSVSHMGF I+GIGSITD GLNGAVLQIISHG I AALFFLAGTSYDRIR  YLDEMGG+AI +PKIFT+FS  SMASLALPGMSGFVAELIVFFGIITS K+FLMPKI+ITFVMAIGMILTPIYSLSM RQMFYGYKLFNAPNSYFFDSGPRELFV ISI LPVIGIGIYPDFVLSLS DK EAI+SN+F
Sbjct:  262 VRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNLKKRIAYSSVSHMGFTIIGIGSITDAGLNGAVLQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAISMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSPKYFLMPKILITFVMAIGMILTPIYSLSMSRQMFYGYKLFNAPNSYFFDSGPRELFVSISIFLPVIGIGIYPDFVLSLSVDKVEAILSNYF 498          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_GOSHI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Gossypium hirsutum GN=ndhD PE=3 SV=1)

HSP 1 Score: 416.387 bits (1069), Expect = 8.243e-116
Identity = 208/237 (87.76%), Postives = 223/237 (94.09%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            +RINMELLPHAHSIFSPW +IVGT+QIIYAASTS GQRNLKKRIAYSSVSHMGFII+GIGSITDTGLNGA+LQIISHG I AALFFLAGTSYDR+R  YLDEMGG+A+ IPKIFT+FSILSMASLALPGMSGFVAELIVFFGIITSQK+FLMPKI+ITFVMAIGMILTPIYSLSM RQMFYGYKLFNAP+SYFFDSGPRELFV ISI LPVIGIGIYPDFVLSLS +K E I+ N+F
Sbjct:  262 VRINMELLPHAHSIFSPWLIIVGTMQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRMRLVYLDEMGGMAVSIPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKYFLMPKILITFVMAIGMILTPIYSLSMSRQMFYGYKLFNAPSSYFFDSGPRELFVSISIFLPVIGIGIYPDFVLSLSGEKVETILYNYF 498          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_GOSBA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Gossypium barbadense GN=ndhD PE=3 SV=1)

HSP 1 Score: 416.387 bits (1069), Expect = 8.243e-116
Identity = 208/237 (87.76%), Postives = 223/237 (94.09%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            +RINMELLPHAHSIFSPW +IVGT+QIIYAASTS GQRNLKKRIAYSSVSHMGFII+GIGSITDTGLNGA+LQIISHG I AALFFLAGTSYDR+R  YLDEMGG+A+ IPKIFT+FSILSMASLALPGMSGFVAELIVFFGIITSQK+FLMPKI+ITFVMAIGMILTPIYSLSM RQMFYGYKLFNAP+SYFFDSGPRELFV ISI LPVIGIGIYPDFVLSLS +K E I+ N+F
Sbjct:  262 VRINMELLPHAHSIFSPWLIIVGTMQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRMRLVYLDEMGGMAVSIPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKYFLMPKILITFVMAIGMILTPIYSLSMSRQMFYGYKLFNAPSSYFFDSGPRELFVSISIFLPVIGIGIYPDFVLSLSGEKVETILYNYF 498          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_CHLSC (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Chloranthus spicatus GN=ndhD PE=3 SV=1)

HSP 1 Score: 414.075 bits (1063), Expect = 4.091e-115
Identity = 206/237 (86.92%), Postives = 218/237 (91.98%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            +RINMELLPHAHSIFSPW MIVGT+Q+IYAASTSPGQRNLKKRIAYSSVSHM FII+GIGSITDTGLNGA+LQIISHG I AALFFLAGTSYDRIR  YLDEMGG+AIP+PKIFT+FS  SMASLALPGMSGFVAE IVFFGIITS K+F MPKI+ITFVMAIGMILTPIYSLSM RQMFYGYKLFN PNSYF DSGPRELFV I I LPVIGIGIYPDFVLSLS DK EAI+SN+F
Sbjct:  262 VRINMELLPHAHSIFSPWLMIVGTIQVIYAASTSPGQRNLKKRIAYSSVSHMAFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLIYLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAESIVFFGIITSPKYFFMPKILITFVMAIGMILTPIYSLSMSRQMFYGYKLFNVPNSYFVDSGPRELFVSICIFLPVIGIGIYPDFVLSLSVDKVEAILSNYF 498          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_LACSA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Lactuca sativa GN=ndhD PE=3 SV=1)

HSP 1 Score: 413.305 bits (1061), Expect = 6.978e-115
Identity = 205/237 (86.50%), Postives = 219/237 (92.41%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            IRINMELLPHAHSIFSPW MIVGT+QIIYAASTSPGQRNLKKRIAYSSVSHMGFI++GI SITDTGLNGA+LQIISHG I AALFFLAGTSYDRIR  YLD+MGG+AIP+PKIFT+FS  SMASLALPGMSGFVAE+IVF GIITSQK+ LMPKI ITFVMAIGMILTPIYSLSMLRQMFYGYKLFN PN+Y FDSGPRELFV ISI LPVIGIG+YPDFVLSLS DK E I+SN+F
Sbjct:  262 IRINMELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNLKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDQMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFVMAIGMILTPIYSLSMLRQMFYGYKLFNTPNAYVFDSGPRELFVSISIFLPVIGIGMYPDFVLSLSVDKVEGILSNYF 498          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_CUCSA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus GN=ndhD PE=2 SV=2)

HSP 1 Score: 412.92 bits (1060), Expect = 9.113e-115
Identity = 208/237 (87.76%), Postives = 220/237 (92.83%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            +RINMELLPHAHSIFSPW +IVG +QIIYAASTS GQRNLKKRIAYSSVSHMGFII+GIGSI+DTGLNGA+LQIISHG I AALFFLAGTSYDRIR  YLDEMGGLAIPIPKIFT FSILSMASLALPGMSGFVAELIVFFGIITSQK+ LM K+VIT VMAIG+ILTPIY LSMLRQMFYGYKLFNA NSYFFDSGPRELFV ISIL+PVIGIGIYPDFV SLS DK EAI+SN+F
Sbjct:  262 VRINMELLPHAHSIFSPWLIIVGIIQIIYAASTSSGQRNLKKRIAYSSVSHMGFIIIGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKMVITLVMAIGIILTPIYLLSMLRQMFYGYKLFNAKNSYFFDSGPRELFVAISILIPVIGIGIYPDFVFSLSVDKVEAILSNYF 498          
BLAST of CV712684 vs. ExPASy Swiss-Prot
Match: NU4C_BUXMI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Buxus microphylla GN=ndhD PE=3 SV=2)

HSP 1 Score: 412.92 bits (1060), Expect = 9.113e-115
Identity = 208/237 (87.76%), Postives = 220/237 (92.83%), Query Frame = 2
Query:    2 IRINMELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNFF 712
            IRINMELLPHAHSIFSPW +IVGT+QIIYAASTSPGQRNLKKRIAYSSVSHMGFII+GIGSITD GLNGA+LQIISHG I AALFFLAGTSYDRIR  YLDEMGG+AI +PKIFT+FS  SMASLALPGMSGFVAELIVFFGIITSQK+FLMPKI+ITFVMAIGMILTPIYSLSM RQMFYGYKLFN  NS+F DSGPRELFV ISI LPVIGIGIYPDFVLSLS DK EAI+SN+F
Sbjct:  263 IRINMELLPHAHSIFSPWLVIVGTMQIIYAASTSPGQRNLKKRIAYSSVSHMGFIIIGIGSITDAGLNGAILQIISHGFIGAALFFLAGTSYDRIRLIYLDEMGGIAIQMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSQKYFLMPKILITFVMAIGMILTPIYSLSMSRQMFYGYKLFNTTNSFFSDSGPRELFVSISIFLPVIGIGIYPDFVLSLSVDKVEAILSNYF 499          
The following BLAST results are available for this feature:
BLAST of CV712684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 325
Match NameE-valueIdentityDescription
NU4C_CITSI1.310e-129100.00NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_VITVI1.605e-11990.30NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_PANGI1.502e-11788.61NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_PLAOC4.371e-11789.03NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_GOSHI8.243e-11687.76NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_GOSBA8.243e-11687.76NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_CHLSC4.091e-11586.92NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_LACSA6.978e-11586.50NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_CUCSA9.113e-11587.76NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_BUXMI9.113e-11587.76NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001M02_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712684 ID=CV712684; Name=CV712684; organism=Citrus sinensis; type=EST; length=746bp
GATTCGAATCAATATGGAACTATTACCGCACGCTCATTCTATATTTTCCC
CCTGGTTCATGATAGTAGGTACCGTGCAAATAATTTATGCAGCTTCAACA
TCTCCCGGCCAACGGAATTTAAAAAAAAGAATAGCCTATTCCTCTGTATC
TCATATGGGTTTCATAATTCTAGGAATAGGCTCGATAACCGATACAGGTC
TCAATGGAGCCGTTTTACAAATAATTTCTCATGGGTTGATTAGTGCTGCA
CTTTTTTTCTTGGCAGGAACGAGTTATGATAGAATACGTTTTGCTTATCT
AGACGAAATGGGCGGACTAGCTATACCAATTCCAAAGATCTTCACGCTAT
TCAGTATCTTATCGATGGCCTCCCTTGCATTACCCGGCATGAGTGGTTTT
GTTGCAGAATTGATAGTATTTTTTGGAATAATTACCAGCCAAAAATTTTT
TTTAATGCCAAAAATAGTAATCACTTTTGTAATGGCAATTGGAATGATAT
TAACTCCTATTTATTCATTATCTATGTTACGGCAAATGTTCTATGGGTAC
AAGCTATTTAATGCCCCAAACTCTTATTTTTTTGATTCTGGACCACGGGA
GTTATTTGTTTTGATCTCGATTCTTCTACCCGTAATAGGTATTGGTATTT
ATCCCGATTTCGTTCTCTCACTATCAGCGGACAAGGCCGAAGCTATTATA
TCGAATTTTTTTTTGTAGATAGTTTTCATGACTAANAAAAATCAAA
back to top