CV712637 | Citrus Genome Database

Overview


Name	CV712637
Unique Name	CV712637
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	786

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig3085	contig	Csv1_Contig3085:11..796.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CV712637 vs. ExPASy Swiss-Prot
Match: ATPAM_SOYBN (ATP synthase subunit alpha, mitochondrial OS=Glycine max GN=ATPA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.041e-20
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = -2

Query:  621 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 785
            AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  334 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

[Close]

BLAST of CV712637 vs. ExPASy Swiss-Prot
Match: ATPAM_RAPSA (ATP synthase subunit alpha, mitochondrial OS=Raphanus sativus GN=ATPA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.041e-20
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = -2

Query:  621 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 785
            AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  334 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

[Close]

BLAST of CV712637 vs. ExPASy Swiss-Prot
Match: ATPAM_PHAVU (ATP synthase subunit alpha, mitochondrial OS=Phaseolus vulgaris GN=ATPA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.041e-20
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = -2

Query:  621 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 785
            AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  334 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

[Close]

BLAST of CV712637 vs. ExPASy Swiss-Prot
Match: ATPAM_PEA (ATP synthase subunit alpha, mitochondrial OS=Pisum sativum GN=ATPA PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 7.041e-20
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = -2

Query:  621 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 785
            AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  334 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

[Close]

BLAST of CV712637 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSJ (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPA PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.041e-20
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = -2

Query:  621 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 785
            AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  334 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

[Close]

BLAST of CV712637 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSI (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. indica GN=ATPA PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.041e-20
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = -2

Query:  621 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 785
            AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  334 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

[Close]

BLAST of CV712637 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSA (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa GN=ATPA PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.041e-20
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = -2

Query:  621 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 785
            AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  334 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

[Close]

BLAST of CV712637 vs. ExPASy Swiss-Prot
Match: ATPAM_OENBI (ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis GN=ATPA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.041e-20
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = -2

Query:  621 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 785
            AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  334 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

[Close]

BLAST of CV712637 vs. ExPASy Swiss-Prot
Match: ATPAM_MAIZE (ATP synthase subunit alpha, mitochondrial OS=Zea mays GN=ATPA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.041e-20
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = -2

Query:  621 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 785
            AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  334 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

[Close]

BLAST of CV712637 vs. ExPASy Swiss-Prot
Match: ATPAM_BRANA (ATP synthase subunit alpha, mitochondrial OS=Brassica napus GN=ATPA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.041e-20
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = -2

Query:  621 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 785
            AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  334 AGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

The following BLAST results are available for this feature:

BLAST of CV712637 vs. ExPASy Swiss-Prot

BLAST of CV712637 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ATPAM_SOYBN	7.041e-20	87.27	ATP synthase subunit alpha, mitochondrial OS=Glyci...	[more]
ATPAM_RAPSA	7.041e-20	87.27	ATP synthase subunit alpha, mitochondrial OS=Rapha...	[more]
ATPAM_PHAVU	7.041e-20	87.27	ATP synthase subunit alpha, mitochondrial OS=Phase...	[more]
ATPAM_PEA	7.041e-20	87.27	ATP synthase subunit alpha, mitochondrial OS=Pisum...	[more]
ATPAM_ORYSJ	7.041e-20	87.27	ATP synthase subunit alpha, mitochondrial OS=Oryza...	[more]
ATPAM_ORYSI	7.041e-20	87.27	ATP synthase subunit alpha, mitochondrial OS=Oryza...	[more]
ATPAM_ORYSA	7.041e-20	87.27	ATP synthase subunit alpha, mitochondrial OS=Oryza...	[more]
ATPAM_OENBI	7.041e-20	87.27	ATP synthase subunit alpha, mitochondrial OS=Oenot...	[more]
ATPAM_MAIZE	7.041e-20	87.27	ATP synthase subunit alpha, mitochondrial OS=Zea m...	[more]
ATPAM_BRANA	7.041e-20	87.27	ATP synthase subunit alpha, mitochondrial OS=Brass...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_0001K22_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001K22, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV712637 ID=CV712637; Name=CV712637; organism=Citrus sinensis; type=EST; length=786bp
GCTCGTCTCACTCGCCTATATGGGAGACTTTGGCGAGTCCCATTTCGTTC
GATTTGCTCTAGATGGGAGAGCAAAGTGCGTTGGGATAATAGAGGGTTCT
CCCTGTCGCTATTAGTATGATTAAAGAGCACCCCCCGTATATCCGGTAAG
TTATGAAAGATTCTCCACGGAGAGAACCCATCATCAATTAACGCGGATTC
GATTCGTTTCTCAATTCGAAAATGAGACTCTAAAATCTCTAAGAAGGATG
GTAGGTGAGCAGAAGTGTGCTTTCCTACGAAATATAAAGAAAGCCTCCGC
GCTAGAATCTGTCTGCGGATAGAATCCTGCAGTAGCGGCGGGTGTTCCGG
GATTACCGGGGGAGAGGGGGGTTCAACGGGTACTGTTTCTTGGCCGTGAG
GAGGTCCCTCTTGCGCTTGGGCAAGCCAATCCACAATTGGAGGTGAATCG
ATCTGCCCGTCGCAGAAGGCTAGAGGTATAGTACTCTGAAAAGAAATAAG
AATGAAGAAGATAAAACCCCACATTAAGATTTTAATTGGGTTTTTTCTTT
TAAAAATATCATTAGTGGATTCCCATTGGTTAGGAGAACCCAAAGGCAAA
GGCGTGATCGTGAAAATTTTTTGTTGGAGCGCGGAAACATTCACAATAGA
GCCAACGCGACTGACAGATAAGCCGACGTTAATAGCGGGTCTAATTCCGC
GATAAAAGAGCTCTGTTTCCAAACAAATTTGTCCGTCAGTAATTGAAATA
ACATTTGTAGGAATATAAGCCGATACATCTCCAGCT