CV712621

Overview
NameCV712621
Unique NameCV712621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712621 vs. ExPASy Swiss-Prot
Match: YMF19_HELAN (Putative ATP synthase protein YMF19 OS=Helianthus annuus GN=YMF19 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.842e-37
Identity = 74/88 (84.09%), Postives = 76/88 (86.36%), Query Frame = 3
Query:    3 GFSTGVSYMYSSLFEVSQWCKAVDLLGKRKKITLISCFGEISGSRGMERNIFYLIXXXXXXXXXNPGWGITCRNDIMLIHVLHGQGKI 266
            GFSTG+SYMYSSLFE SQWCKAVDLLGKR+KITLISCFGEISGSRGMERNIFYLI         NPGWGITCRNDIMLIHV HGQG I
Sbjct:   70 GFSTGLSYMYSSLFEDSQWCKAVDLLGKRRKITLISCFGEISGSRGMERNIFYLISKSSYSTSSNPGWGITCRNDIMLIHVPHGQGSI 157          
BLAST of CV712621 vs. ExPASy Swiss-Prot
Match: YMF19_OENBE (Putative ATP synthase protein YMF19 OS=Oenothera bertiana GN=YMF19 PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.302e-36
Identity = 74/89 (83.15%), Postives = 76/89 (85.39%), Query Frame = 3
Query:    3 GFSTGVSYMYSSLFEVSQWCKAVDLLGKRKKITLISCFGEISGSRGMERNIFYLIXXXXXXXXXNPGWGITCRNDIMLIHVLHGQGKIL 269
            GFSTGVSYMYSSLFEVSQWCKAVDLLGKRKKITLISCFGEIS SRGMERNIFYLI         N GWG+TCRNDIMLIHV HGQG I+
Sbjct:   70 GFSTGVSYMYSSLFEVSQWCKAVDLLGKRKKITLISCFGEISSSRGMERNIFYLISKSSYSTSSNLGWGVTCRNDIMLIHVPHGQGSIV 158          
BLAST of CV712621 vs. ExPASy Swiss-Prot
Match: YMF19_BRANA (Putative ATP synthase protein YMF19 OS=Brassica napus GN=YMF19 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.377e-30
Identity = 70/91 (76.92%), Postives = 73/91 (80.22%), Query Frame = 3
Query:    3 GFSTGVSYMYSSLFEVSQWCKAVDLLGKRKKITLISCFGEISGSRGMERNIFYLIXXXXXXXXXNPGWGIT---CRNDIMLIHVLHGQGKI 266
            GFSTGVSYMY+SLFEVSQWCKAVDLLGKR+KITLISCFGEISGSRGMERNI Y I         N G  IT   CRNDIMLIHV+HGQG I
Sbjct:   70 GFSTGVSYMYASLFEVSQWCKAVDLLGKRRKITLISCFGEISGSRGMERNILYNI---SKSSPSNTGRWITCRNCRNDIMLIHVVHGQGSI 157          
BLAST of CV712621 vs. ExPASy Swiss-Prot
Match: YMF19_ARATH (ATP synthase protein YMF19 OS=Arabidopsis thaliana GN=YMF19 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.377e-30
Identity = 70/91 (76.92%), Postives = 73/91 (80.22%), Query Frame = 3
Query:    3 GFSTGVSYMYSSLFEVSQWCKAVDLLGKRKKITLISCFGEISGSRGMERNIFYLIXXXXXXXXXNPGWGIT---CRNDIMLIHVLHGQGKI 266
            GFSTGVSYMY+SLFEVSQWCKAVDLLGKR+KITLISCFGEISGSRGMERNI Y I         N G  IT   CRNDIMLIHV+HGQG I
Sbjct:   70 GFSTGVSYMYASLFEVSQWCKAVDLLGKRRKITLISCFGEISGSRGMERNILYNI---SKSSPSNTGRWITCRNCRNDIMLIHVVHGQGSI 157          
BLAST of CV712621 vs. ExPASy Swiss-Prot
Match: YMF19_RAPSA (Putative ATP synthase protein YMF19 OS=Raphanus sativus GN=YMF19 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.917e-30
Identity = 69/91 (75.82%), Postives = 72/91 (79.12%), Query Frame = 3
Query:    3 GFSTGVSYMYSSLFEVSQWCKAVDLLGKRKKITLISCFGEISGSRGMERNIFYLIXXXXXXXXXNPGWGIT---CRNDIMLIHVLHGQGKI 266
            GFSTGVSYMY+SLFEVSQWCKAVDLLGKR+KITLISCFGEISGSRGMERNI Y I         N G  IT   CRNDIMLIH +HGQG I
Sbjct:   70 GFSTGVSYMYASLFEVSQWCKAVDLLGKRRKITLISCFGEISGSRGMERNILYNI---SKSSPSNTGRWITCRNCRNDIMLIHAVHGQGSI 157          
BLAST of CV712621 vs. ExPASy Swiss-Prot
Match: YMF19_WHEAT (Putative ATP synthase protein YMF19 OS=Triticum aestivum GN=YMF19 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.303e-25
Identity = 61/89 (68.54%), Postives = 66/89 (74.16%), Query Frame = 3
Query:    3 GFSTGVSYMYSSLFEVSQWCKAVDLLGKRKKITLISCFGEISGSRGMERNIFYLIXXXXXXXXXNPGWGITCRNDIMLIHVLHGQGKIL 269
            GFSTG+SYMYSSL EVSQWCK VD LGKR+KITLIS FGEISGSRGMER I YLI         +    ITC  +IML HVLHGQG I+
Sbjct:   70 GFSTGLSYMYSSLSEVSQWCKTVDYLGKRRKITLISDFGEISGSRGMERQILYLISKSSYNTSSS---RITCWKNIMLTHVLHGQGSII 155          
The following BLAST results are available for this feature:
BLAST of CV712621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
YMF19_HELAN5.842e-3784.09Putative ATP synthase protein YMF19 OS=Helianthus ... [more]
YMF19_OENBE1.302e-3683.15Putative ATP synthase protein YMF19 OS=Oenothera b... [more]
YMF19_BRANA2.377e-3076.92Putative ATP synthase protein YMF19 OS=Brassica na... [more]
YMF19_ARATH2.377e-3076.92ATP synthase protein YMF19 OS=Arabidopsis thaliana... [more]
YMF19_RAPSA6.917e-3075.82Putative ATP synthase protein YMF19 OS=Raphanus sa... [more]
YMF19_WHEAT2.303e-2568.54Putative ATP synthase protein YMF19 OS=Triticum ae... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001K13_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712621 ID=CV712621; Name=CV712621; organism=Citrus sinensis; type=EST; length=746bp
AAGGTTTTAGCACCGGTGTATCCTATATGTACTCTAGCTTATTCGAAGTA
TCCCAATGGTGTAAGGCCGTCGACTTATTGGGAAAAAGGAAGAAAATCAC
TTTGATCTCTTGTTTCGGAGAAATAAGTGGCTCACGAGGAATGGAAAGAA
ACATATTCTATTTGATCTCGAAGTCCTCATATAGCACTTCTTCCAATCCT
GGATGGGGGATCACTTGTAGGAATGATATAATGCTAATCCATGTTCTACA
CGGACAAGGAAAAATTTTAATAGAAAAATGATGAGTTGGGAAGACAAAAA
AACGATATCTATATCGTTTTTTTGGATGCTCAACCCCCCCCTTATCAATT
CTTTTTGAGTCTTTTTTATTTTTATAAACTTTTTTTATTATTTTTCCGCT
TCTTCGCGATATCGAAGAAAAGGGCGCCCAATCTTCTATATATAGGGGCT
TTTATTCCCACTTTACTGACGAAGAATTTCGTGGCCTATAAGATTCACAA
TTTGGTTGTACCTATTTCGATTGATAATGGATAGAAATTCGGGAGCTGGG
AGGTCCTATCGTGAGGGGACTTCACGGTAGGCGAAGGCGGGGCTACCTTC
AACTTCAACTGAATGGAATTGTTACTTTAAAAAAAAATGCTTGCTGAAAA
TGAAAATCAAAGAAAGAAGGTCCATTTTCCCACGTAGTTCGTTGGTCAAA
CCAATGATTCTCTTCTCNAAGTAATAGAGAGATCTAGTTAGACTTC
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