CV712521

Overview
NameCV712521
Unique NameCV712521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2928 contig Csv1_Contig2928:1..871. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_VITVI (Photosystem I iron-sulfur center OS=Vitis vinifera GN=psaC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_TOBAC (Photosystem I iron-sulfur center OS=Nicotiana tabacum GN=psaC PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_SOYBN (Photosystem I iron-sulfur center OS=Glycine max GN=psaC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_SOLTU (Photosystem I iron-sulfur center OS=Solanum tuberosum GN=psaC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_SOLLC (Photosystem I iron-sulfur center OS=Solanum lycopersicum GN=psaC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_SOLBU (Photosystem I iron-sulfur center OS=Solanum bulbocastanum GN=psaC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_POPTR (Photosystem I iron-sulfur center OS=Populus trichocarpa GN=psaC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_POPAL (Photosystem I iron-sulfur center OS=Populus alba GN=psaC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_PLAOC (Photosystem I iron-sulfur center OS=Platanus occidentalis GN=psaC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81
[Close]
BLAST of CV712521 vs. ExPASy Swiss-Prot
Match: PSAC_PIPCE (Photosystem I iron-sulfur center OS=Piper cenocladum GN=psaC PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.802e-45
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  538 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 780
            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY
Sbjct:    1 MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 81
The following BLAST results are available for this feature:
BLAST of CV712521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
PSAC_VITVI9.802e-45100.00Photosystem I iron-sulfur center OS=Vitis vinifera... [more]
PSAC_TOBAC9.802e-45100.00Photosystem I iron-sulfur center OS=Nicotiana taba... [more]
PSAC_SOYBN9.802e-45100.00Photosystem I iron-sulfur center OS=Glycine max GN... [more]
PSAC_SOLTU9.802e-45100.00Photosystem I iron-sulfur center OS=Solanum tubero... [more]
PSAC_SOLLC9.802e-45100.00Photosystem I iron-sulfur center OS=Solanum lycope... [more]
PSAC_SOLBU9.802e-45100.00Photosystem I iron-sulfur center OS=Solanum bulboc... [more]
PSAC_POPTR9.802e-45100.00Photosystem I iron-sulfur center OS=Populus tricho... [more]
PSAC_POPAL9.802e-45100.00Photosystem I iron-sulfur center OS=Populus alba G... [more]
PSAC_PLAOC9.802e-45100.00Photosystem I iron-sulfur center OS=Platanus occid... [more]
PSAC_PIPCE9.802e-45100.00Photosystem I iron-sulfur center OS=Piper cenoclad... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I03_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712521 ID=CV712521; Name=CV712521; organism=Citrus sinensis; type=EST; length=871bp
CCCCCCTCGAGCATGTACTTGGTTTTGAGTGCCTATTTATTTTCGATTGG
CATCTATGGCTTGATTACGAGCCGAAATATGGTTCGGGCCTTGATGTGCC
TTGAACTTATACTAAATGCAGTTAATATCAATTTTGTAACATTCTCTGAT
TTTTTTGATAGTCGACAATTAAAAGGAGATATTTTTTCAATTTTTGTTAT
AGCTATTGCAGCCGCTGAAGCAGCTATCGGATCAGCTATTGTTTCGTCAA
TTTATCGTAACAGAAAATCGACGCGTATCAATCAATCGACTTTGTTGAAT
AAGTAGTATTTATAAATCATAATATTCCTAAATTGAATTTAGGATATAGA
ATATGCCCTAATTTCGATCCTGTTTGTGAAACTGTAAGAAATCAAAGTAT
CTTTGTTCCCTTGATCCAGAAGTGGATTAATTAGCAAAATTATGGTAAAT
CATTGATTCATCTGGTGTTTAAATATGACATTTCAAAATTGACTAGATCG
AAAATGAAAAAGTTCAAAACAAAAATAGATAGATCCAATGTCACATTCAG
TAAAGATTTATGATACATGTATAGGGTGTACTCAATGTGTACGAGCTTGC
CCCACGGATGTATTAGAAATGATACCTTGGGACGGATGTAAAGCAAAGCA
AATTGCTTCTGCTCCAAGAACAGAGGACTGTGTTGGTTGTAAGCGATGTG
AATCCGCCTGTCCAACGGATTTCTTGAGTGTTCGAGTTTATTTATGGCAT
GAAACAACCCGAAGCATGGGTCTAGCTTATTGATATTGATACGTTCCCGA
AAAACCCACTTGAATCCGTTTTGAATACAGTTTTTTTTTTACCGATTACC
GACAAAAACCCGTACTCGAAA
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