CV712505

Overview
NameCV712505
Unique NameCV712505
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712505_ssr82 microsatellite CV712505_ssr82:82..91. BLAST: Citrus ESTs to Prunus persica proteins V1
CV712505_ssr70 microsatellite CV712505_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CV712505 vs. ExPASy Swiss-Prot
Match: AMP23_MACIN (Vicilin-like antimicrobial peptides 2-3 (Fragment) OS=Macadamia integrifolia GN=AMP2-3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 41/150 (27.33%), Postives = 77/150 (51.33%), Query Frame = -2 
Query:  179 NIGIFMVNLTKGSMMGPHWNPMATEIAIVLHGQGMVRVVCP---------STGKQSD------CKNMRFKVEEGDAFAVPRFHPMAQMSFNNDXXXXXXXXXXXXTNYPQFLAGK-RSVLQELDKQILSVSFNVSNTTINQLLARQEEYI 580
            ++ +F+ N+T+GSMMGP +N  +T++ +V  G+  V + CP           GK+ +       + +R ++ + +A  V   HP+  +S  N+             N+  FLAG+ R+VLQ+++ Q + ++F  S   + +L   Q+E I
Sbjct:  445 DVSVFIANITQGSMMGPFFNTRSTKVVVVASGEADVEMACPHLSGRHGGRGGGKRHEEEEEVHYEQVRARLSKREAIVVLAGHPVVFVSSGNENLLLFAFGINAQNNHENFLAGRERNVLQQIEPQAMELAFAASRKEVEELFNSQDESI 594
[Close]
BLAST of CV712505 vs. ExPASy Swiss-Prot
Match: AMP22_MACIN (Vicilin-like antimicrobial peptides 2-2 OS=Macadamia integrifolia GN=AMP2-2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 40/150 (26.67%), Postives = 77/150 (51.33%), Query Frame = -2 
Query:  179 NIGIFMVNLTKGSMMGPHWNPMATEIAIVLHGQGMVRVVCPST---------GKQSD------CKNMRFKVEEGDAFAVPRFHPMAQMSFNNDXXXXXXXXXXXXTNYPQFLAGK-RSVLQELDKQILSVSFNVSNTTINQLLARQEEYI 580
            ++ +F+ N+T+GSMMGP +N  +T++ +V  G+  V + CP           GK+ +       + ++ ++ + +A  VP  HP+  +S  N+             N+  FLAG+ R+VLQ+++ Q + ++F      + +L   Q+E I
Sbjct:  486 DVSVFIANITQGSMMGPFFNTRSTKVVVVASGEADVEMACPHLSGRHGGRRGGKRHEEEEDVHYEQVKARLSKREAIVVPVGHPVVFVSSGNENLLLFAFGINAQNNHENFLAGRERNVLQQIEPQAMELAFAAPRKEVEELFNSQDESI 635
The following BLAST results are available for this feature:
BLAST of CV712505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AMP23_MACIN3.124e-1227.33Vicilin-like antimicrobial peptides 2-3 (Fragment)... [more]
AMP22_MACIN3.124e-1226.67Vicilin-like antimicrobial peptides 2-2 OS=Macadam... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H19_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712505 ID=CV712505; Name=CV712505; organism=Citrus sinensis; type=EST; length=584bp
TTCTGGCTTCCTCCTCCTCTCTTTTTCTTGCTTCTTCTTCCTCTTGTCTC
TTTCTTGCTTCCTCCTCTCTCTTTCTTTCTTTCTCTCTCTCCCTGGCTTC
TTCTTCCTCCCTTTCTCTTCTAATCTCTTCCTGCATTATACTTTCCTCTT
CCTCGGCACAGGAGGTGCAATCTAATATGATGTATTCTTCCTGCCGAGCC
AATAGTTGATTAATTGTCGTGTTAGAAACATTGAAGGATACACTCAAAAT
TTGTTTGTCTAATTCTTGAAGGACTGATCTTTTTCCCGCTAAGAATTGAG
GATAATTTGTGCTTGTAGATGTGCTGAACCCCACGAAAACAAATGAGTCG
TTGTTGAAAGACATCTGAGCCATGGGATGAAACCTAGGAACAGCAAAAGC
ATCTCCTTCCTCGACCTTGAACCTCATATTTTTGCAGTCTGACTGTTTTC
CTGTGCTCGGACAAACCACCCGAACCATTCCTTGTCCATGAAGCACTATT
GCTATCTCAGTGGCCATTGGATTCCAATGCGGTCCCATCATCGAGCCCTT
TGTCAAGTTCACCATGAAAATACCAATATTTCCT
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