CV712489

Overview
NameCV712489
Unique NameCV712489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7428 contig Csv1_Contig7428:106..846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF_VITVI (Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.360e-62
Identity = 118/146 (80.82%), Postives = 128/146 (87.67%), Query Frame = 3
Query:  144 MSFRGLSRPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 581
            MSFRGL   NA+SGMGVADHSKN F EL+RKKVHRYVIFKID          TGGPAES+++FAAALPENDCRYAVYDFD+VTSENCQKSKIFFIAWSP +SRIRAKMLYATSK+RFRRELDG+HYEIQATDPTEMDLE LR RA+
Sbjct:    1 MSFRGL---NASSGMGVADHSKNTFLELKRKKVHRYVIFKIDEKKKEVVVEKTGGPAESFDEFAAALPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQATDPTEMDLEVLRERAH 143          
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF6_ARATH (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.408e-59
Identity = 111/146 (76.03%), Postives = 120/146 (82.19%), Query Frame = 3
Query:  144 MSFRGLSRPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 581
            MSFRGLSRPNA SGMGVAD SK  F ELQRKK HRYV+FKID          TG P ESY+DF A+LP+NDCRYAVYDFD+VTSENCQKSKIFF AWSPSTS IRAK+LY+TSKD+  REL GIHYEIQATDPTE+DLE LR RAN
Sbjct:    1 MSFRGLSRPNAISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRERAN 146          
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF11_ORYSJ (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.667e-52
Identity = 98/140 (70.00%), Postives = 113/140 (80.71%), Query Frame = 3
Query:  162 SRPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 581
            SR NA+SG+GVA   K  F ELQRKK HRYVIFKID          TG   ES++DF  +LPE+DCRYA+YDFD+VT ENCQKSKIFF+AWSPS SRIRAKMLYATSK+RFRRELDG+HYEIQATDP+E+D+E LR RA+
Sbjct:    6 SRANASSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSLPESDCRYAIYDFDFVTEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYEIQATDPSELDIELLRERAH 145          
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF2_ORYSJ (Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.539e-50
Identity = 97/140 (69.29%), Postives = 110/140 (78.57%), Query Frame = 3
Query:  162 SRPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 581
            S  NA+SGMGVA   ++ F ELQ KK  RYVIFKI+          TG   ESY+DF A+LPENDCRYA+YDFD+VT EN QKSKIFFIAWSPSTSRIRAKMLY+TSKDR ++ELDG HYEIQATDPTE+DLE LR RA+
Sbjct:    6 SHSNASSGMGVAPDIRDTFLELQMKKAFRYVIFKIEEKQKQVVVEKTGATTESYDDFLASLPENDCRYALYDFDFVTGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYEIQATDPTEVDLEVLRERAH 145          
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF1_PETHY (Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.858e-46
Identity = 84/137 (61.31%), Postives = 107/137 (78.10%), Query Frame = 3
Query:  171 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 581
            NA SGM V D  K  F EL+ K+ HR++++KI+           G P ESYEDFAA+LPEN+CRYAVYDFD+VT+ENCQKS+IFFIAW P T+R+R+KM+YA+SKDRF+RELDGI  E+QA DPTEM L+ +++RAN
Sbjct:    3 NAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKIGEPTESYEDFAASLPENECRYAVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVELQACDPTEMGLDVIQSRAN 139          
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF10_ORYSJ (Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.157e-45
Identity = 85/130 (65.38%), Postives = 104/130 (80.00%), Query Frame = 3
Query:  192 VADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 581
            V + SK+AF EL+R+KVHRYVIFKID          TG P ESY+DF A+LP +DCRYAVYD D+V+ +NC+KSKIFFI+WSPS SRIRAK +YA S+++FR ELDG+H+EIQATDP +MDLE LR RAN
Sbjct:   20 VPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASLPADDCRYAVYDLDFVSDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 149          
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF7_ORYSJ (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.182e-44
Identity = 82/137 (59.85%), Postives = 105/137 (76.64%), Query Frame = 3
Query:  171 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 581
            NA SGM V D  K  F EL+ K+ +R++I+KID           G P  +Y+DFAA+LP N+CRYA++D+D+VT ENCQKSKIFFIAWSP TSR+R+KM+YA+SKDRF+RELDGI  E+QATDPTE+ L+ +R RAN
Sbjct:    3 NAASGMAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASLPANECRYAIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVIRGRAN 139          
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF1_ARATH (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.722e-44
Identity = 80/137 (58.39%), Postives = 105/137 (76.64%), Query Frame = 3
Query:  171 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 581
            NA SGM V D  K  F EL+ K+ HR++++KI+           G P ++YE+FAA LP ++CRYA+YDFD+VT+ENCQKSKIFFIAW P  +++R+KM+YA+SKDRF+RELDGI  E+QATDPTEMDL+  R+RAN
Sbjct:    3 NAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN 139          
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF4_ARATH (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 6.348e-44
Identity = 80/137 (58.39%), Postives = 105/137 (76.64%), Query Frame = 3
Query:  171 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 581
            NA SGM V D  K  F EL+ K+ HR++++KI+           G P  +YEDFAA+LP ++CRYA+YDFD+VT+ENCQKSKIFFIAW P  +++R+KM+YA+SKDRF+RELDGI  E+QATDPTEMDL+ L++R N
Sbjct:    3 NAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSRVN 139          
BLAST of CV712489 vs. ExPASy Swiss-Prot
Match: ADF10_ARATH (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.414e-43
Identity = 80/137 (58.39%), Postives = 104/137 (75.91%), Query Frame = 3
Query:  171 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 581
            N+ SGM V+D  K  F EL+ K+ +R+++FKID           G P E+YEDF  ++PE++CRYAVYD+D+ T ENCQKSKIFFIAWSP TSR+R+KMLYA+SKDRF+RELDGI  E+QATDP+EM L+ ++ R N
Sbjct:    3 NSASGMHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIPEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIKGRVN 139          
The following BLAST results are available for this feature:
BLAST of CV712489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ADF_VITVI1.360e-6280.82Actin-depolymerizing factor OS=Vitis vinifera PE=2... [more]
ADF6_ARATH1.408e-5976.03Actin-depolymerizing factor 6 OS=Arabidopsis thali... [more]
ADF11_ORYSJ1.667e-5270.00Actin-depolymerizing factor 11 OS=Oryza sativa sub... [more]
ADF2_ORYSJ4.539e-5069.29Actin-depolymerizing factor 2 OS=Oryza sativa subs... [more]
ADF1_PETHY8.858e-4661.31Actin-depolymerizing factor 1 OS=Petunia hybrida G... [more]
ADF10_ORYSJ1.157e-4565.38Actin-depolymerizing factor 10 OS=Oryza sativa sub... [more]
ADF7_ORYSJ2.182e-4459.85Actin-depolymerizing factor 7 OS=Oryza sativa subs... [more]
ADF1_ARATH3.722e-4458.39Actin-depolymerizing factor 1 OS=Arabidopsis thali... [more]
ADF4_ARATH6.348e-4458.39Actin-depolymerizing factor 4 OS=Arabidopsis thali... [more]
ADF10_ARATH1.414e-4358.39Actin-depolymerizing factor 10 OS=Arabidopsis thal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001H09_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712489 ID=CV712489; Name=CV712489; organism=Citrus sinensis; type=EST; length=741bp
AAAAATCTTCTTTCTTTTTTTTAATTATTACGTATAAAACTAGGCCACTT
CTTTTAGTTTTATTCTGAGCACAATACATTTTCGCTCTCTTTCATTGTTT
ATTTACTTGCTCTGGTGATCTGCGTTCTGTTGCTGCCGCCGCCATGTCTT
TCAGAGGACTAAGTCGACCAAATGCCACTTCTGGCATGGGCGTTGCTGAT
CACAGCAAAAATGCATTCACGGAATTGCAAAGGAAGAAGGTTCACCGTTA
TGTGATTTTTAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTTGAGAAGA
CTGGTGGCCCCGCTGAGAGCTACGAGGATTTCGCTGCTGCTTTGCCTGAG
AATGATTGTCGATATGCTGTATATGACTTTGACTATGTGACTTCTGAGAA
TTGTCAGAAGAGCAAGATATTCTTCATTGCATGGTCCCCTTCAACCTCTA
GAATCCGTGCCAAGATGCTGTACGCCACATCTAAAGACAGATTTCGACGG
GAGCTGGATGGTATCCACTATGAGATTCAGGCTACTGATCCTACAGAGAT
GGATCTTGAAGAGCTTAGAAACCGTGCAAACTGAAGAGTCTGCAGTTTTG
CAGTTTCTTCCTTCCATGAAAAAAAAATCAGCAAGGGGTTCTGCCAACTG
TTGCTCCTTGCTTCATTAATCTATGTGCAAAAATCTATGCGTAATCTTCG
AATAACTGGCAATGTGGGAAGACTGATTGGGCTGAGGTTAT
back to top