CV712483
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712483 vs. ExPASy Swiss-Prot
Match: CHD4_MOUSE (Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13 Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 2 Query: 8 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 136 C +C +GGELLCCDTCP++YH+ CL PPL ++P G W CP C+ Sbjct: 445 CRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 487
BLAST of CV712483 vs. ExPASy Swiss-Prot
Match: CHD4_HUMAN (Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13 Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 2 Query: 8 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 136 C +C +GGELLCCDTCP++YH+ CL PPL ++P G W CP C+ Sbjct: 452 CRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 494
BLAST of CV712483 vs. ExPASy Swiss-Prot
Match: CHD3_DROME (Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3) HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13 Identity = 42/126 (33.33%), Postives = 62/126 (49.21%), Query Frame = 2 Query: 8 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELE-DLEKPISHLWKSSFKKSILASKLVMQVRH--KESSQSFFEKDDVE----CLAEKQTVSKRNTFGDNEECSTKDVDDGQG 364 C +C +GG+LLCCD+CP+ YH CL+PPL+ +P G W CP C L EK +S W + SK + + K S++ + + L V+ D EE S +++DD G Sbjct: 38 CKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGDWICPRCIPLPGKAEKILSWRWALDRSVELRTSKGEKRREYFIKWHGMSYWHCEWIPEGQMLLHHASMVASFQRRSDMEEPSLEELDDQDG 163
BLAST of CV712483 vs. ExPASy Swiss-Prot
Match: CHDM_DROME (Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13 Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 2 Query: 8 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 136 C +C +GGELLCCD+CP+ YH CL PPL+ +P G W+CP CS Sbjct: 440 CRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIPDGDWRCPRCS 482
BLAST of CV712483 vs. ExPASy Swiss-Prot
Match: CHD5_HUMAN (Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13 Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 2 Query: 8 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 136 C +C +GGELLCCD CP++YHL CL PPL ++P G W CP C+ Sbjct: 419 CRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCT 461
BLAST of CV712483 vs. ExPASy Swiss-Prot
Match: AIRE_HUMAN (Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13 Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 2 Query: 5 ECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 133 EC +C +GGEL+CCD CP +HL CL+PPL ++P G+W+C SC Sbjct: 298 ECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 340
BLAST of CV712483 vs. ExPASy Swiss-Prot
Match: AIRE_MOUSE (Autoimmune regulator OS=Mus musculus GN=Aire PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12 Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 2 Query: 5 ECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 133 EC +C +GGEL+CCD CP +HL CL+PPL+++P G W+C C Sbjct: 300 ECAVCHDGGELICCDGCPRAFHLACLSPPLQEIPSGLWRCSCC 342
BLAST of CV712483 vs. ExPASy Swiss-Prot
Match: CHD3_HUMAN (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3) HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12 Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 2 Query: 8 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 136 C +C +GGELLCCD C ++YH+ CL PPL D+P G W CP C+ Sbjct: 459 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCT 501 The following BLAST results are available for this feature:
BLAST of CV712483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CV712483 ID=CV712483; Name=CV712483; organism=Citrus sinensis; type=EST; length=757bpback to top |