CV712483

Overview
NameCV712483
Unique NameCV712483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712483 vs. ExPASy Swiss-Prot
Match: CHD4_MOUSE (Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 2
Query:    8 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 136
            C +C +GGELLCCDTCP++YH+ CL PPL ++P G W CP C+
Sbjct:  445 CRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 487          
BLAST of CV712483 vs. ExPASy Swiss-Prot
Match: CHD4_HUMAN (Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 2
Query:    8 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 136
            C +C +GGELLCCDTCP++YH+ CL PPL ++P G W CP C+
Sbjct:  452 CRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 494          
BLAST of CV712483 vs. ExPASy Swiss-Prot
Match: CHD3_DROME (Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 42/126 (33.33%), Postives = 62/126 (49.21%), Query Frame = 2
Query:    8 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCSELE-DLEKPISHLWKSSFKKSILASKLVMQVRH--KESSQSFFEKDDVE----CLAEKQTVSKRNTFGDNEECSTKDVDDGQG 364
            C +C +GG+LLCCD+CP+ YH  CL+PPL+ +P G W CP C  L    EK +S  W       +  SK   +  +  K    S++  + +      L     V+      D EE S +++DD  G
Sbjct:   38 CKVCSDGGDLLCCDSCPSVYHRTCLSPPLKSIPKGDWICPRCIPLPGKAEKILSWRWALDRSVELRTSKGEKRREYFIKWHGMSYWHCEWIPEGQMLLHHASMVASFQRRSDMEEPSLEELDDQDG 163          
BLAST of CV712483 vs. ExPASy Swiss-Prot
Match: CHDM_DROME (Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 2
Query:    8 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 136
            C +C +GGELLCCD+CP+ YH  CL PPL+ +P G W+CP CS
Sbjct:  440 CRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIPDGDWRCPRCS 482          
BLAST of CV712483 vs. ExPASy Swiss-Prot
Match: CHD5_HUMAN (Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 2
Query:    8 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 136
            C +C +GGELLCCD CP++YHL CL PPL ++P G W CP C+
Sbjct:  419 CRVCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCT 461          
BLAST of CV712483 vs. ExPASy Swiss-Prot
Match: AIRE_HUMAN (Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 2
Query:    5 ECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 133
            EC +C +GGEL+CCD CP  +HL CL+PPL ++P G+W+C SC
Sbjct:  298 ECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 340          
BLAST of CV712483 vs. ExPASy Swiss-Prot
Match: AIRE_MOUSE (Autoimmune regulator OS=Mus musculus GN=Aire PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 2
Query:    5 ECLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSC 133
            EC +C +GGEL+CCD CP  +HL CL+PPL+++P G W+C  C
Sbjct:  300 ECAVCHDGGELICCDGCPRAFHLACLSPPLQEIPSGLWRCSCC 342          
BLAST of CV712483 vs. ExPASy Swiss-Prot
Match: CHD3_HUMAN (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 2
Query:    8 CLICCNGGELLCCDTCPNTYHLQCLTPPLEDVPPGSWKCPSCS 136
            C +C +GGELLCCD C ++YH+ CL PPL D+P G W CP C+
Sbjct:  459 CRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCT 501          
The following BLAST results are available for this feature:
BLAST of CV712483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CHD4_MOUSE2.082e-1360.47Chromodomain-helicase-DNA-binding protein 4 OS=Mus... [more]
CHD4_HUMAN2.082e-1360.47Chromodomain-helicase-DNA-binding protein 4 OS=Hom... [more]
CHD3_DROME3.552e-1333.33Chromodomain-helicase-DNA-binding protein 3 OS=Dro... [more]
CHDM_DROME4.639e-1360.47Chromodomain-helicase-DNA-binding protein Mi-2 hom... [more]
CHD5_HUMAN4.639e-1360.47Chromodomain-helicase-DNA-binding protein 5 OS=Hom... [more]
AIRE_HUMAN6.059e-1358.14Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 ... [more]
AIRE_MOUSE3.007e-1255.81Autoimmune regulator OS=Mus musculus GN=Aire PE=1 ... [more]
CHD3_HUMAN3.927e-1258.14Chromodomain-helicase-DNA-binding protein 3 OS=Hom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H05_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712483 ID=CV712483; Name=CV712483; organism=Citrus sinensis; type=EST; length=757bp
CTATGAGTGCCTAATTTGCTGTAACGGTGGAGAGCTGCTTTGCTGTGACA
CATGCCCAAACACTTACCATCTCCAATGCCTTACTCCCCCACTTGAGGAC
GTTCCACCTGGAAGCTGGAAGTGCCCCAGCTGCTCGGAACTGGAAGATCT
TGAAAAACCCATTTCTCATCTTTGGAAGTCTTCTTTTAAAAAAAGCATCT
TAGCTAGCAAACTTGTGATGCAGGTTCGTCATAAAGAATCATCCCAGTCA
TTTTTTGAGAAAGATGATGTGGAATGTCTAGCAGAAAAACAAACAGTATC
CAAGAGAAATACTTTTGGAGATAATGAAGAATGTTCTACTAAAGATGTTG
ATGATGGCCAAGGAATTAAGACTAGCATTAAAGTGCATGAACCGAGGATC
TGCAGAGGAAGACACAGCAACAAAGAGGCTATGACAGAAAGCAAGGATGT
AGATTCAAAAAAGTCAATCAGAGTCCAAGATTCTTCCACAGCAACAAATG
CGGTCCATCATGAACCTACTACATCTACTTCCAGGTTACTCAGCCTACCA
TTAGCACTAATTGGGAATCCAGTAAATGAGCAAGGGGCTGCTGGTAAACA
GCTTGCTGAGAACGCTGAAATTTCTATGCCGCATACTGACAAGGACACAA
CTGACAAACTTTTGATTCTGAGGGATGTCATGCTGGAGTCAATGAAAAGC
CATGACAAACTGTTGCAGGCAAGTAAAAGTGCCCCCATTCAGAACAGGAC
TATGAAC
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