CV712481

Overview
NameCV712481
Unique NameCV712481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6698 contig Csv1_Contig6698:401..971. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_CITSI (Cytochrome c biogenesis protein ccsA OS=Citrus sinensis GN=ccsA PE=3 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.241e-90
Identity = 166/190 (87.37%), Postives = 166/190 (87.37%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGY             LVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSDLYESLIFLSWSLSIIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYAALLCGSLLSTALLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 254          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_MANES (Cytochrome c biogenesis protein ccsA OS=Manihot esculenta GN=ccsA PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 3.403e-64
Identity = 128/192 (66.67%), Postives = 140/192 (72.92%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLN--SLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            H PLSDLYE           IH +  FK ++N LSAITAPS FFTQGFATSG LT MHQS ILVPALQ QWLMMHVSMM+LGY             LVITFRK+IR+F K  N   +N SF FSEIQYM E+KNV  N   LS+RNYYR+Q+IQQLD W YRIIS+GFIFLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HLPLSDLYESLIFLSWSFSIIHMVPYFKKHKNFLSAITAPSTFFTQGFATSGLLTDMHQSEILVPALQSQWLMMHVSMMILGYAALLCGSLFSVAFLVITFRKIIRIFDKSNNL--LNNSFFFSEIQYMAERKNVLRNISFLSSRNYYRFQLIQQLDDWGYRIISIGFIFLTIGILSGAVWANEAWGSYWNW 254          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_GOSHI (Cytochrome c biogenesis protein ccsA OS=Gossypium hirsutum GN=ccsA PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.293e-63
Identity = 128/194 (65.98%), Postives = 140/194 (72.16%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKI--FDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IH +    FK  +N+LSAITAPSA FTQGFATSG LTKMHQS IL PALQ QWLMMHVSMMVLGY             LVITFRK I++  +  NF     SF F +IQYMNE+ NV LN+  LS++NYYRYQ+ QQLDRWSYRIISLGFIFLT GILSGAVWANEAWGSYWNW
Sbjct:   67 HFPLSDLYESLIFLSWGFSLIHMVSYLKFKKRKNNLSAITAPSAIFTQGFATSGLLTKMHQSAILAPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRKAIKIIGENNNF-----SFSFGKIQYMNERSNVLLNTYFLSSKNYYRYQLTQQLDRWSYRIISLGFIFLTIGILSGAVWANEAWGSYWNW 255          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_EUCGG (Cytochrome c biogenesis protein ccsA OS=Eucalyptus globulus subsp. globulus GN=ccsA PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.293e-63
Identity = 125/192 (65.10%), Postives = 141/192 (73.44%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IH +  FK ++N+LS ITAPS  FTQGFATSG LT+MHQS I+VPALQ QWLMMHVSMM+LGY             LVIT RK IR+F K+ NF  +N SF F EIQYMNE+ NV L +   S+RNYYR Q+IQQLD+WSYRIISLGF+FLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSDLYESLIFLSWSFSVIHMVPYFKKHKNYLSTITAPSTIFTQGFATSGLLTEMHQSEIVVPALQSQWLMMHVSMMILGYAALLCGSLLSVALLVITLRKAIRVFSKKNNF--LNESFSFVEIQYMNERSNVLLTTSFCSSRNYYRAQLIQQLDQWSYRIISLGFLFLTIGILSGAVWANEAWGSYWNW 254          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_VITVI (Cytochrome c biogenesis protein ccsA OS=Vitis vinifera GN=ccsA PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 3.763e-63
Identity = 126/192 (65.62%), Postives = 139/192 (72.40%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IH +  FK ++NHLSA+TAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMMVLGY             LVITFR+ IR+  K  +F  +N SF F EIQYMN+  NV  N+  LS RNYYR Q IQQLD WSYR+ISLGF+FLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSDLYESLIFLSWSFSIIHIVPYFKKHKNHLSALTAPSAIFTQGFATSGLLTEMHQSEILVPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRQDIRILCKNNHF--LNKSFSFDEIQYMNKGNNVLQNTSFLSVRNYYRAQFIQQLDHWSYRVISLGFLFLTIGILSGAVWANEAWGSYWNW 254          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_GOSBA (Cytochrome c biogenesis protein ccsA OS=Gossypium barbadense GN=ccsA PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 4.914e-63
Identity = 127/194 (65.46%), Postives = 139/194 (71.65%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKI--FDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IH +    FK  +N+LSAITAP A FTQGFATSG LTKMHQS IL PALQ QWLMMHVSMMVLGY             LVITFRK I++  +  NF     SF F +IQYMNE+ NV LN+  LS++NYYRYQ+ QQLDRWSYRIISLGFIFLT GILSGAVWANEAWGSYWNW
Sbjct:   67 HFPLSDLYESLIFLSWGFSLIHMVSYLKFKKRKNNLSAITAPRAIFTQGFATSGLLTKMHQSAILAPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRKAIKIIGENNNF-----SFSFGKIQYMNERSNVLLNTYFLSSKNYYRYQLTQQLDRWSYRIISLGFIFLTIGILSGAVWANEAWGSYWNW 255          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_CARPA (Cytochrome c biogenesis protein ccsA OS=Carica papaya GN=ccsA PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 6.418e-63
Identity = 128/193 (66.32%), Postives = 142/193 (73.58%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDF-KNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLS+LYE           IH +  F K ++N+L+AIT PSA  TQGFATSG L KM QS ILVPALQ QWLMMHVSMMVLGY             LVITFRKVIR+F K  NF  +N SF F +IQYMNE+ N+ LN+  LS+RNYYRYQ+IQQLD WSYRIISLGFIFLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HFPLSNLYESLIFLSWSFSIIHMVCYFNKKHKNNLNAITGPSAILTQGFATSGLLNKMSQSVILVPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRKVIRIFGKSNNF--LNESFSFGKIQYMNERSNILLNTSFLSSRNYYRYQLIQQLDHWSYRIISLGFIFLTIGILSGAVWANEAWGSYWNW 255          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_PLAOC (Cytochrome c biogenesis protein ccsA OS=Platanus occidentalis GN=ccsA PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 7.096e-62
Identity = 124/192 (64.58%), Postives = 140/192 (72.92%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            HFPLSDLYE           IH +   +N++NHLSAITAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMMVL Y             LVI FRK I +F K  N++ + GSF F E QY+NE+ N+  N+  LS RNYYRYQ+IQQLD WSYR+ISLGFIFLT GILSGAVWANEAWG+YWNW
Sbjct:   65 HFPLSDLYESLIFLSWSFSIIHMVPKIRNHKNHLSAITAPSAIFTQGFATSGLLTEMHQSAILVPALQSQWLMMHVSMMVLSYAALLCGSLLSIALLVIRFRKNIEIFGK-DNYLLI-GSFSFGESQYVNERSNILRNTSFLSFRNYYRYQLIQQLDHWSYRVISLGFIFLTIGILSGAVWANEAWGAYWNW 254          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_BUXMI (Cytochrome c biogenesis protein ccsA OS=Buxus microphylla GN=ccsA PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 3.522e-61
Identity = 125/192 (65.10%), Postives = 137/192 (71.35%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLN--SLSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            H PLS+LYE           IH I  FKN++NHLS +TAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMMVL Y             LVITFRK I +F KR +   + GSF F EIQY NE+ NV  N   LS RNY RYQ+I+QLD WSYR+ISLGFIFLT GILSGAVWANEAWGSYWNW
Sbjct:   65 HLPLSNLYESLIFLSWSFSIIHMIPYFKNHKNHLSLVTAPSAIFTQGFATSGLLTEMHQSAILVPALQSQWLMMHVSMMVLSYGALLCGSLLSVALLVITFRKNIDIFGKRNHL--LIGSFSFGEIQYTNERSNVLRNVSFLSLRNYRRYQLIRQLDNWSYRVISLGFIFLTIGILSGAVWANEAWGSYWNW 254          
BLAST of CV712481 vs. ExPASy Swiss-Prot
Match: CCSA_MORIN (Cytochrome c biogenesis protein ccsA OS=Morus indica GN=ccsA PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.007e-61
Identity = 124/192 (64.58%), Postives = 137/192 (71.35%), Query Frame = -1
Query:    2 HFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNYYRYQVIQQLDRWSYRIISLGFIFLTTGILSGAVWANEAWGSYWNW 571
            + PLS+LYE           IH +  FK  +N+L AITAPSA FTQGFATSG LT+MHQS ILVPALQ  WLMMHVSMMVLGY             LVITFRK I +F K  NF  VN SF   EIQY+ EK N+  N+  LS+RNYYR+Q+IQQLD WSYRIISLGFIFLT GILSGAVWANEAWGSYWNW
Sbjct:   65 YLPLSNLYESLIFLSWSFSIIHMVPYFKKYKNYLKAITAPSAIFTQGFATSGLLTEMHQSEILVPALQSHWLMMHVSMMVLGYAALLCGSLLSLALLVITFRKFISIFSKSNNF--VNESFSLGEIQYVREKNNLLPNTSFLSSRNYYRFQLIQQLDLWSYRIISLGFIFLTIGILSGAVWANEAWGSYWNW 254          
The following BLAST results are available for this feature:
BLAST of CV712481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
CCSA_CITSI1.241e-9087.37Cytochrome c biogenesis protein ccsA OS=Citrus sin... [more]
CCSA_MANES3.403e-6466.67Cytochrome c biogenesis protein ccsA OS=Manihot es... [more]
CCSA_GOSHI1.293e-6365.98Cytochrome c biogenesis protein ccsA OS=Gossypium ... [more]
CCSA_EUCGG1.293e-6365.10Cytochrome c biogenesis protein ccsA OS=Eucalyptus... [more]
CCSA_VITVI3.763e-6365.63Cytochrome c biogenesis protein ccsA OS=Vitis vini... [more]
CCSA_GOSBA4.914e-6365.46Cytochrome c biogenesis protein ccsA OS=Gossypium ... [more]
CCSA_CARPA6.418e-6366.32Cytochrome c biogenesis protein ccsA OS=Carica pap... [more]
CCSA_PLAOC7.096e-6264.58Cytochrome c biogenesis protein ccsA OS=Platanus o... [more]
CCSA_BUXMI3.522e-6165.10Cytochrome c biogenesis protein ccsA OS=Buxus micr... [more]
CCSA_MORIN6.007e-6164.58Cytochrome c biogenesis protein ccsA OS=Morus indi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H04_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712481 ID=CV712481; Name=CV712481; organism=Citrus sinensis; type=EST; length=571bp
CCCAATTCCAATAAGACCCCCACGCCTCATTAGCCCATACTGCTCCCGAA
AGAATACCTGTGGTTAAAAAGATAAATCCTAAACTAATAATACGATAACT
CCAACGATCCAATTGTTGAATCACTTGATACCTGTAATAATTTCTAGCGG
AAAGACTATTTAGAAAAACATTCTTTTTTTCGTTCATGTATTGGATTTCA
CTGAAACAAAATGACCCATTTACATGTACAAAATTTTTTCTTTTCAAAAA
AAGCCTTATCACTTTTCGAAATGTAATGACTAGAAGAGCCGTGGATAATA
ATGATCCACATAAAAGAGCTGCATAGCCCAATACCATCATACTTACGTGC
ATCATTAACCACTGGACTTGGAGAGCGGGTACTAATATTCTGGATTGATG
CATTTTGGTTAAAAAACCCGAAGTCGCAAAGCCTTGGGTAAAAAAAGCAC
TTGGTGCCGTTATAGCGCTTAAATGATTTTGATTATTTTTAAAATCAAAA
ATCTTATGAATAATAGATAAACTCCATGAAAGAAAGATTAATGATTCATA
TAAATCACTTAATGGGAAATG
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