CV712479

Overview
NameCV712479
Unique NameCV712479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712479_ssr83 microsatellite CV712479_ssr83:83..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2239 contig Csv1_Contig2239:65..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.175e-43
Identity = 91/109 (83.49%), Postives = 94/109 (86.24%), Query Frame = 3 
Query:  204 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 530
            PVSRSSRAGLQFPVGR+HR LK+              Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Sbjct:   29 PVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137
[Close]
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.846e-43
Identity = 90/109 (82.57%), Postives = 94/109 (86.24%), Query Frame = 3 
Query:  204 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 530
            P++RSSRAGLQFPVGRVHRLLK               YTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKS+KE
Sbjct:   26 PITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSAKE 134
[Close]
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.266e-43
Identity = 90/109 (82.57%), Postives = 93/109 (85.32%), Query Frame = 3 
Query:  204 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 530
            PVSRSSRAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK+SKE
Sbjct:   30 PVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138
[Close]
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.841e-42
Identity = 89/109 (81.65%), Postives = 93/109 (85.32%), Query Frame = 3 
Query:  204 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 530
            PVSRSSRAG+QFPVGR+HR LK               YTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct:   31 PVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139
[Close]
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.139e-42
Identity = 86/109 (78.90%), Postives = 93/109 (85.32%), Query Frame = 3 
Query:  204 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 530
            P+SRS+RAG+QFPVGR+HR LK               YTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct:   28 PISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136
[Close]
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.736e-41
Identity = 84/108 (77.78%), Postives = 92/108 (85.19%), Query Frame = 3 
Query:  207 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 530
            +SRSSRAG+QFPVGR+HR LK+              YTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Sbjct:   29 ISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136
[Close]
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 7.241e-39
Identity = 82/108 (75.93%), Postives = 88/108 (81.48%), Query Frame = 3 
Query:  207 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 530
            ++RSSRAGLQFPVGR+HRLLK               YTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 7.241e-39
Identity = 82/108 (75.93%), Postives = 88/108 (81.48%), Query Frame = 3 
Query:  207 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 530
            ++RSSRAGLQFPVGR+HRLLK               YTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2AZ_SHEEP (Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 3.594e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 
Query:  207 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 530
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CV712479 vs. ExPASy Swiss-Prot
Match: H2AZ_RAT (Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 3.594e-38
Identity = 82/108 (75.93%), Postives = 87/108 (80.56%), Query Frame = 3 
Query:  207 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXXYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 530
            VSRS RAGLQFPVGR+HR LK               Y+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
The following BLAST results are available for this feature:
BLAST of CV712479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2AV3_ORYSJ2.175e-4383.49Probable histone H2A variant 3 OS=Oryza sativa sub... [more]
H2AV3_ARATH4.846e-4382.57Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2AV1_ORYSJ8.266e-4382.57Probable histone H2A variant 1 OS=Oryza sativa sub... [more]
H2AV2_ORYSJ1.841e-4281.65Probable histone H2A variant 2 OS=Oryza sativa sub... [more]
H2AV1_ARATH9.139e-4278.90Histone H2A variant 1 OS=Arabidopsis thaliana GN=H... [more]
H2AV2_ARATH7.736e-4177.78Probable histone H2A variant 2 OS=Arabidopsis thal... [more]
H2AZL_XENTR7.241e-3975.93Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl... [more]
H2AZL_XENLA7.241e-3975.93Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE... [more]
H2AZ_SHEEP3.594e-3875.93Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3[more]
H2AZ_RAT3.594e-3875.93Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H03_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712479 ID=CV712479; Name=CV712479; organism=Citrus sinensis; type=EST; length=607bp
CTCAAACGCTCGCTTAGCTTTATCTCTTTCTTTCCTCTCCGATAATTTTC
ATCTCAGAAAAAATTAAAAATAATTAAATAAATAATTAATTAATTTAAAA
GAAGCTGTAGAAATTAGGCGGGAAAATGTCGGGCAAAGGAGCCAAAGGAC
TGATAACAGGCAAAACCACCATTAACAACAACAAGGATAAGGACAAGAAG
AAACCCGTCTCCCGTTCTTCTCGTGCTGGTCTTCAGTTCCCAGTGGGAAG
GGTCCATCGTCTGCTAAAGGAAAGGGCTGCTGCTCACGGAAGGGTTGGTG
CAACAGCTGCTGTTTATACAGCAGCCATTTTGGAGTATCTAACTGCCGAA
GTGTTGGAGTTGGCAGGGAATGCTAGCAAGGATTTGAAGGTCAAACGTAT
TACTCCAAGGCATTTGCAGCTTGCTATCCGAGGAGATGAAGAACTTGACA
CTCTCATTAAAGGAACCATAGCCGGTGGAGGAGTTATTCCTCATATCCAC
AAGTCCCTCATCAATAAATCCTCCAAAGAGTAGTTCGTGACACCATCATC
CTCTCGGCTTTGTTTATGTGTGTACTTTTAGCTGTGCTGAAATATCTAAA
TGAGAAA
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