CV712469

Overview
NameCV712469
Unique NameCV712469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6035 contig Csv1_Contig6035:185..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712469 vs. ExPASy Swiss-Prot
Match: PA2G4_MOUSE (Proliferation-associated protein 2G4 OS=Mus musculus GN=Pa2g4 PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.451e-42
Identity = 96/177 (54.24%), Postives = 121/177 (68.36%), Query Frame = 2
Query:    2 EGVLSHQLKQFVIDGNKFVLSVSNPDTRVDD--AEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYKRAVDKNYHLKMKASRFIFSEINQKFPIMPFTARALE-EKRARLGLVECVNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHTLQE--IQSTKTIDDPEIKAWL 517
            EG+LSHQLKQ VIDG K ++       + D   AEFE +EVYAVD++ S+G+GK K   ++ TTIYKR   K Y LKMK SR  FSE+ ++F  MPFT RA E EK+AR+G+VEC  HELLQP+ VL+EK G++VA  KFTVLLMPNG  RITS   +    +S   + D E+KA L
Sbjct:  183 EGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQR-TTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALL 358          
BLAST of CV712469 vs. ExPASy Swiss-Prot
Match: PA2G4_HUMAN (Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.451e-42
Identity = 96/177 (54.24%), Postives = 121/177 (68.36%), Query Frame = 2
Query:    2 EGVLSHQLKQFVIDGNKFVLSVSNPDTRVDD--AEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYKRAVDKNYHLKMKASRFIFSEINQKFPIMPFTARALE-EKRARLGLVECVNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHTLQE--IQSTKTIDDPEIKAWL 517
            EG+LSHQLKQ VIDG K ++       + D   AEFE +EVYAVD++ S+G+GK K   ++ TTIYKR   K Y LKMK SR  FSE+ ++F  MPFT RA E EK+AR+G+VEC  HELLQP+ VL+EK G++VA  KFTVLLMPNG  RITS   +    +S   + D E+KA L
Sbjct:  183 EGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQR-TTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALL 358          
BLAST of CV712469 vs. ExPASy Swiss-Prot
Match: PRLA_DICDI (Proliferation-associated protein A OS=Dictyostelium discoideum GN=prlA PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.900e-34
Identity = 75/174 (43.10%), Postives = 113/174 (64.94%), Query Frame = 2
Query:    5 GVLSHQLKQFVIDGNKFVLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYKRAVDKNYHLKMKASRFIFSEINQKFPIMPFTARALEEKRARLGLVECVNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRI--TSHTLQEIQSTKTIDDPEIKAWLA 520
            G+LSH+LK+F+IDG K + S + P  ++   EF+ENEVY +DIV STG+GK +  +  + TIY+R +D  Y LK KASR    +I +++  +PF  R  +EK ++LGLVE V H++L  YPVL ++ G  V   K TVL++PNG+ ++  T   L  ++S  ++ D  IKA +A
Sbjct:  190 GILSHELKRFIIDGEKVIFSKNEPSQKIQTYEFQENEVYCIDIVMSTGEGKARE-EADRPTIYRRNLDSTYKLKSKASRDFKDQIVKRYSALPFPLRNFDEKVSKLGLVELVEHQVLAAYPVLFDRSGCEVVQFKTTVLVLPNGNHKLIGTEFPLPFVRSEFSVTDDAIKALIA 362          
BLAST of CV712469 vs. ExPASy Swiss-Prot
Match: CDB4_SCHPO (Curved DNA-binding protein OS=Schizosaccharomyces pombe GN=cdb4 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.040e-24
Identity = 72/176 (40.91%), Postives = 100/176 (56.82%), Query Frame = 2
Query:    5 GVLSHQLKQFVIDGNKFVLSVSNPDTR--VDDAEFEENEVYAVDIVTSTGDGKPKLLDEKQTTIYKRAVDKNYHLKMKASRFIFSEINQKFPIMPFTARALE-EKRARLGLVECVNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHTLQE--IQSTKTIDDPEIKAWL 517
            G+LSHQ ++ VIDG K V+   +   R  +D   FEE EVY VDI+ ST         +  T IYK+  D  Y LK++ASR ++SEI  KF   PF+ R +  + R  +GL EC +H+LL PY VL +K G  VA    T+ L   G+  ++    +E  I+S K ++DPEI A L
Sbjct:  186 GMLSHQQEREVIDGKKQVILNPSDSQRSEMDTFTFEEGEVYGVDILVSTSPSGKVKRSDIATRIYKKT-DTTYMLKLQASRKVYSEIQTKFGPFPFSTRNISFDSRTNMGLNECTSHKLLFPYEVLLDKDGGIVAEFYSTIALTKKGTIILSDSEPKEDFIKSDKKVEDPEIVALL 360          
The following BLAST results are available for this feature:
BLAST of CV712469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PA2G4_MOUSE1.451e-4254.24Proliferation-associated protein 2G4 OS=Mus muscul... [more]
PA2G4_HUMAN1.451e-4254.24Proliferation-associated protein 2G4 OS=Homo sapie... [more]
PRLA_DICDI1.900e-3443.10Proliferation-associated protein A OS=Dictyosteliu... [more]
CDB4_SCHPO3.040e-2440.91Curved DNA-binding protein OS=Schizosaccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001G21_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712469 ID=CV712469; Name=CV712469; organism=Citrus sinensis; type=EST; length=708bp
TGAAGGTGTTCTCAGCCACCAGCTGAAGCAGTTTGTGATTGACGGAAACA
AATTTGTACTGAGTGTCTCCAATCCAGATACCAGAGTTGATGATGCAGAA
TTTGAGGAGAACGAAGTTTATGCTGTAGATATAGTTACAAGCACAGGTGA
TGGAAAGCCAAAGCTGTTGGATGAGAAGCAGACGACTATTTACAAGAGAG
CCGTGGACAAAAACTATCACTTAAAAATGAAAGCTTCTAGATTTATCTTT
AGTGAAATTAATCAGAAATTTCCAATCATGCCTTTCACTGCAAGGGCTTT
GGAAGAAAAAAGGGCTAGGCTAGGATTAGTGGAATGTGTGAATCATGAGC
TTCTGCAGCCATATCCTGTTCTTCACGAGAAGCCTGGTGATTATGTTGCT
CATATCAAATTCACAGTTTTACTGATGCCGAATGGGTCAGATCGGATCAC
ATCTCATACTCTGCAGGAGATTCAGTCCACCAAGACAATCGATGATCCTG
AAATTAAGGCCTGGTTAGCCTTGGGCATCAAGACTAAGAAGAAAGGTGGT
GGAAAGAAGAAGAAAGGTAAGAAGGGCGACAAAGCTGAGGAATCAACGGA
AGCCGAGCCCATGGATGCAACAAATGGAGCTGCAACTCAAGAATGAGTGT
TTACTTATTTATTTTCATTTCTTTCCCCAATTTTGATGCTTTGTTCACTT
GTATCTGG
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