CV712468

Overview
NameCV712468
Unique NameCV712468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6035 contig Csv1_Contig6035:150..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712468 vs. ExPASy Swiss-Prot
Match: PA2G4_MOUSE (Proliferation-associated protein 2G4 OS=Mus musculus GN=Pa2g4 PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 7.878e-42
Identity = 95/177 (53.67%), Postives = 120/177 (67.80%), Query Frame = -2
Query:  228 EGVLSHQLKQFVIDGNKFVLSVSNPDTRVDD--AEFEENEVYAVDIVTSTGDGKPKLLDEKQTIIYKRAVDKNYHLKMKASRFIFSEINQKFPIMPFTARALE-EKRARLGLVECVNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHTLQE--IQSTKTIDDPEIKAWL 743
            EG+LSHQLKQ VIDG K ++       + D   AEFE +EVYAVD++ S+G+GK K   ++ TI YKR   K Y LKMK SR  FSE+ ++F  MPFT RA E EK+AR+G+VEC  HELLQP+ VL+EK G++VA  KFTVLLMPNG  RITS   +    +S   + D E+KA L
Sbjct:  183 EGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQRTTI-YKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALL 358          
BLAST of CV712468 vs. ExPASy Swiss-Prot
Match: PA2G4_HUMAN (Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 7.878e-42
Identity = 95/177 (53.67%), Postives = 120/177 (67.80%), Query Frame = -2
Query:  228 EGVLSHQLKQFVIDGNKFVLSVSNPDTRVDD--AEFEENEVYAVDIVTSTGDGKPKLLDEKQTIIYKRAVDKNYHLKMKASRFIFSEINQKFPIMPFTARALE-EKRARLGLVECVNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHTLQE--IQSTKTIDDPEIKAWL 743
            EG+LSHQLKQ VIDG K ++       + D   AEFE +EVYAVD++ S+G+GK K   ++ TI YKR   K Y LKMK SR  FSE+ ++F  MPFT RA E EK+AR+G+VEC  HELLQP+ VL+EK G++VA  KFTVLLMPNG  RITS   +    +S   + D E+KA L
Sbjct:  183 EGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQRTTI-YKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALL 358          
BLAST of CV712468 vs. ExPASy Swiss-Prot
Match: PRLA_DICDI (Proliferation-associated protein A OS=Dictyostelium discoideum GN=prlA PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.544e-34
Identity = 75/174 (43.10%), Postives = 113/174 (64.94%), Query Frame = -2
Query:  225 GVLSHQLKQFVIDGNKFVLSVSNPDTRVDDAEFEENEVYAVDIVTSTGDGKPKLLDEKQTIIYKRAVDKNYHLKMKASRFIFSEINQKFPIMPFTARALEEKRARLGLVECVNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRI--TSHTLQEIQSTKTIDDPEIKAWLA 740
            G+LSH+LK+F+IDG K + S + P  ++   EF+ENEVY +DIV STG+GK +   ++ TI Y+R +D  Y LK KASR    +I +++  +PF  R  +EK ++LGLVE V H++L  YPVL ++ G  V   K TVL++PNG+ ++  T   L  ++S  ++ D  IKA +A
Sbjct:  190 GILSHELKRFIIDGEKVIFSKNEPSQKIQTYEFQENEVYCIDIVMSTGEGKAREEADRPTI-YRRNLDSTYKLKSKASRDFKDQIVKRYSALPFPLRNFDEKVSKLGLVELVEHQVLAAYPVLFDRSGCEVVQFKTTVLVLPNGNHKLIGTEFPLPFVRSEFSVTDDAIKALIA 362          
BLAST of CV712468 vs. ExPASy Swiss-Prot
Match: CDB4_SCHPO (Curved DNA-binding protein OS=Schizosaccharomyces pombe GN=cdb4 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.672e-24
Identity = 72/176 (40.91%), Postives = 100/176 (56.82%), Query Frame = -2
Query:  228 GVLSHQLKQFVIDGNKFVLSVSNPDTR--VDDAEFEENEVYAVDIVTSTGDGKPKLLDEKQTIIYKRAVDKNYHLKMKASRFIFSEINQKFPIMPFTARALE-EKRARLGLVECVNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHTLQE--IQSTKTIDDPEIKAWL 740
            G+LSHQ ++ VIDG K V+   +   R  +D   FEE EVY VDI+ ST         +  T IYK+  D  Y LK++ASR ++SEI  KF   PF+ R +  + R  +GL EC +H+LL PY VL +K G  VA    T+ L   G+  ++    +E  I+S K ++DPEI A L
Sbjct:  186 GMLSHQQEREVIDGKKQVILNPSDSQRSEMDTFTFEEGEVYGVDILVSTSPSGKVKRSDIATRIYKKT-DTTYMLKLQASRKVYSEIQTKFGPFPFSTRNISFDSRTNMGLNECTSHKLLFPYEVLLDKDGGIVAEFYSTIALTKKGTIILSDSEPKEDFIKSDKKVEDPEIVALL 360          
The following BLAST results are available for this feature:
BLAST of CV712468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PA2G4_MOUSE7.878e-4253.67Proliferation-associated protein 2G4 OS=Mus muscul... [more]
PA2G4_HUMAN7.878e-4253.67Proliferation-associated protein 2G4 OS=Homo sapie... [more]
PRLA_DICDI3.544e-3443.10Proliferation-associated protein A OS=Dictyosteliu... [more]
CDB4_SCHPO5.672e-2440.91Curved DNA-binding protein OS=Schizosaccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001G21_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712468 ID=CV712468; Name=CV712468; organism=Citrus sinensis; type=EST; length=747bp
ATCATTGTCTAAACACTATATTAAACTGTAACCAACCAGATACAAGTGAA
CAAAGCATCAAAATTAGGGGAAAGAAATGAAAATAAATAAGTAAACACTC
ATTCTTGAGTTGCAGCTCCATTTGTTGCATCCATGGGCTCGGCTTCCGTT
GATTCCTCAGCTTTGTCGCCCTTCTTACCTTTCTTCTTCTTTCCACCACC
TTTCTTCTTAGTCTTGATGCCCAAGGCTAACCAGGCCTTAATTTCAGGAT
CATCGATTGTCTTGGTGGACTGAATCTCCTGCAGAGTATGAGATGTGATC
CGATCTGACCCATTCGGCATCAGTAAAACTGTGAATTTGATATGAGCAAC
ATAATCACCAGGCTTCTCGTGAAGAACAGGATATGGCTGCAGAAGCTCAT
GATTCACACATTCCACTAATCCTAGCCTAGCCCTTTTTTCTTCCAAAGCC
CTTGCAGTGAAAGGCATGATTGGAAATTTCTGATTAATTTCACTAAAGAT
AAATCTAGAAGCTTTCATTTTTAAGTGATAGTTTTTGTCCACGGCTCTCT
TGTAAATAATCGTCTGCTTCTCATCCAACAGCTTTGGCTTTCCATCACCT
GTGCTTGTAACTATATCTACAGCATAAACTTCGTTCTCCTCAAATTCTGC
ATCATCAACTCTGGTATCTGGATTGGAGACACTCAGTACAAATTTGTTTC
CGTCAATCACAAACTGCTTCAGCTGGTGGCTGAGAACACCTTCACCT
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