CV712451

Overview
NameCV712451
Unique NameCV712451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV712451 vs. ExPASy Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.935e-20
Identity = 46/75 (61.33%), Postives = 60/75 (80.00%), Query Frame = 2 
Query:  344 IITMARQYVRSKMPRLRWTQDLHLAFVHAVERLGGQERATPKSVLQLMNVKGLSIAHVKSHLQMYRSKKLDASGQ 568
            +I   R YVRS +PRLRWT +LH +FVHAV+ LGGQ +ATPK VL++M+VKGL+I+HVKSHLQMYR  ++   G+
Sbjct:   11 VIGGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSRITLLGK 85
[Close]
BLAST of CV712451 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.724e-12
Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 2 
Query:  383 PRLRWTQDLHLAFVHAVERLGGQERATPKSVLQLMNVKGLSIAHVKSHLQMYRSKK 550
            PRLRWT +LH  FV AV +LGG ++ATPK+++++M VKGL++ H+KSHLQ +R  K
Sbjct:   35 PRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90
The following BLAST results are available for this feature:
BLAST of CV712451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MYBF_ARATH2.935e-2061.33Putative Myb family transcription factor At1g14600... [more]
APL_ARATH1.724e-1257.14Myb family transcription factor APL OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001G11_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712451 ID=CV712451; Name=CV712451; organism=Citrus sinensis; type=EST; length=748bp
CTCAAACCGGATGCGTCCACAATTTTGATAAGCAAGTTTTGTACTTTTCA
CTTGGAGATCCATGATATACAGAGCTCCTTAATTTCTTTGATGGTAATGG
CACTGTGAAGAAGGAGAGAAGATAATCATCATATCGATGGAAAATGTGAC
TGACACGGTTGAGATATCCTCTGATGACAATAAGAGCAATGAAAGTGGAA
CTCAAGCATTTCAAAAGTGTTCATCATTTGACTTGAACGAAGAAGCAGCT
ATGGACGATGCTGAGAATGATAACATCACAAATGTACCATACAGTGGTGG
CACAAGTATTATAAGTACGAACACAACCACGGAAGGGAAAGAAATAATAA
CAATGGCTAGGCAATACGTTCGATCAAAAATGCCTAGGCTCCGCTGGACA
CAAGATCTCCATCTAGCTTTTGTGCATGCTGTTGAGAGGCTTGGAGGCCA
AGAAAGAGCAACTCCAAAATCAGTTCTCCAGCTGATGAATGTAAAAGGAC
TAAGCATTGCTCATGTAAAGAGTCACTTGCAGATGTATCGAAGTAAGAAG
CTTGACGCGTCCGGCCAAGTGTTATCTAATAGGATAATGCAAGAAGGACA
CGACATTCTAGAAATGTATCGAAAATTCAATCAGCATGGGCGTTTTAGAA
TGGATAACAGAAACTACATGTCGTCTCCACTTCTCGAACAACCATGTGAT
TTCAAACCTTACTCTTNCAGATACCATCCATGGGCTCAAGTTGGTCAT
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