CV712448

Overview
NameCV712448
Unique NameCV712448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712448_ssr39 microsatellite CV712448_ssr39:39..50. BLAST: Citrus ESTs to TAIR9
Homology
[Close]
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_CITSI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Citrus sinensis GN=ndhG PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.071e-71
Identity = 138/155 (89.03%), Postives = 138/155 (89.03%), Query Frame = -1 
Query:  334 GPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 798
            GPIHDF                 LFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    5 GPIHDFILVFLGSGLILGGLGVVLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 159
[Close]
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_GOSHI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Gossypium hirsutum GN=ndhG PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.688e-64
Identity = 126/155 (81.29%), Postives = 132/155 (85.16%), Query Frame = -1 
Query:  334 GPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 798
            GPIHDF                 L TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y KDF  NLWTIG+GLTSLVCTSI  SLITTILDTSWYGIIWTTR+NQIIEQDLISNSQQIGIHL+TDFFLPFE
Sbjct:    5 GPIHDFLLVFLGSGLILGGLGVVLLTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKDF--NLWTIGNGLTSLVCTSILVSLITTILDTSWYGIIWTTRSNQIIEQDLISNSQQIGIHLATDFFLPFE 157
[Close]
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_VITVI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Vitis vinifera GN=ndhG PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 8.216e-64
Identity = 125/155 (80.65%), Postives = 131/155 (84.52%), Query Frame = -1 
Query:  334 GPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 798
            GPIHDF                 L TNPIYSAFSLGLV VCISLFYI SNSHFVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF  NLWT+GDG+TS+VCTSIF SLITTILDTSWYGIIWTTR+NQIIEQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    5 GPIHDFLLVFLGSGLILGGLGVVLLTNPIYSAFSLGLVFVCISLFYIPSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF--NLWTVGDGVTSVVCTSIFASLITTILDTSWYGIIWTTRSNQIIEQDLISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_CARPA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Carica papaya GN=ndhG PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.830e-63
Identity = 123/155 (79.35%), Postives = 130/155 (83.87%), Query Frame = -1 
Query:  334 GPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 798
            GPIHDF                 LF NPIYSAFSLG VL CISLFYILSNSHFVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y +DF  NLWTIGDG+TSLVCTSIF SLITTILDTSWYG+IWTTR NQI+EQDLIS+SQQIGIHLSTDFFLPFE
Sbjct:    5 GPIHDFLLVFLGSGLILGGLGVVLFPNPIYSAFSLGFVLACISLFYILSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYRDF--NLWTIGDGITSLVCTSIFLSLITTILDTSWYGVIWTTRLNQILEQDLISSSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_EUCGG (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhG PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.122e-63
Identity = 122/155 (78.71%), Postives = 131/155 (84.52%), Query Frame = -1 
Query:  334 GPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 798
            GPIHDF                 L TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGA+N+LI+FAVMFMNGS+Y KD  LNLWT+GDG+TSLVCTSI  SL+TTILDTSWYGIIWTT++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:    5 GPIHDFLLVFLGSGLILGSLGVVLLTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINILILFAVMFMNGSEYYKD--LNLWTVGDGITSLVCTSILVSLMTTILDTSWYGIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_PANGI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Panax ginseng GN=ndhG PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.452e-62
Identity = 122/155 (78.71%), Postives = 130/155 (83.87%), Query Frame = -1 
Query:  334 GPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 798
            GPIHDF                 L  NPIYSAFSLGLVLVC SLFYILSNSHFVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y KDF  +LWTIGDG+TS+VCTSIF SLITTI DTSWYGIIWTT++NQIIEQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    5 GPIHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGLVLVCTSLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKDF--HLWTIGDGVTSMVCTSIFVSLITTIPDTSWYGIIWTTKSNQIIEQDLISNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_OENPA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oenothera parviflora GN=ndhG PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.452e-62
Identity = 121/155 (78.06%), Postives = 131/155 (84.52%), Query Frame = -1 
Query:  334 GPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 798
            GPIHDF                 L TNPI+SAFSLGLVLVCISLF+ LSNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+YSKD  L LWT+GDG+TSLVCTSIF SLITTILDTSWYGIIWTT++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:    5 GPIHDFLLVFLGSGLIVGGLGVVLLTNPIFSAFSLGLVLVCISLFFSLSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYSKD--LTLWTVGDGITSLVCTSIFISLITTILDTSWYGIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_OENGL (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oenothera glazioviana GN=ndhG PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.452e-62
Identity = 121/155 (78.06%), Postives = 131/155 (84.52%), Query Frame = -1 
Query:  334 GPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 798
            GPIHDF                 L TNPI+SAFSLGLVLVCISLF+ LSNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+YSKD  L LWT+GDG+TSLVCTSIF SLITTILDTSWYGIIWTT++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:    5 GPIHDFLLVFLGSGLIVGGLGVVLLTNPIFSAFSLGLVLVCISLFFSLSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYSKD--LTLWTVGDGITSLVCTSIFISLITTILDTSWYGIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_OENEH (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oenothera elata subsp. hookeri GN=ndhG PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.452e-62
Identity = 121/155 (78.06%), Postives = 131/155 (84.52%), Query Frame = -1 
Query:  334 GPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 798
            GPIHDF                 L TNPI+SAFSLGLVLVCISLF+ LSNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+YSKD  L LWT+GDG+TSLVCTSIF SLITTILDTSWYGIIWTT++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:    5 GPIHDFLLVFLGSGLIVGGLGVVLLTNPIFSAFSLGLVLVCISLFFSLSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYSKD--LTLWTVGDGITSLVCTSIFISLITTILDTSWYGIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CV712448 vs. ExPASy Swiss-Prot
Match: NU6C_OENBI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oenothera biennis GN=ndhG PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.452e-62
Identity = 121/155 (78.06%), Postives = 131/155 (84.52%), Query Frame = -1 
Query:  334 GPIHDFXXXXXXXXXXXXXXXXXLFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 798
            GPIHDF                 L TNPI+SAFSLGLVLVCISLF+ LSNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+YSKD  L LWT+GDG+TSLVCTSIF SLITTILDTSWYGIIWTT++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:    5 GPIHDFLLVFLGSGLIVGGLGVVLLTNPIFSAFSLGLVLVCISLFFSLSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYSKD--LTLWTVGDGITSLVCTSIFISLITTILDTSWYGIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157
The following BLAST results are available for this feature:
BLAST of CV712448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
NU6C_CITSI1.071e-7189.03NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_GOSHI3.688e-6481.29NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_VITVI8.216e-6480.65NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CARPA1.830e-6379.35NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_EUCGG3.122e-6378.71NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_PANGI3.452e-6278.71NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OENPA3.452e-6278.06NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OENGL3.452e-6278.06NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OENEH3.452e-6278.06NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OENBI3.452e-6278.06NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001G10_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712448 ID=CV712448; Name=CV712448; organism=Citrus sinensis; type=EST; length=798bp
CAACTTCCGTACCAATTTCGATTCATTTCAATCTGAACAATAATAATAAT
GCAAGTGATTTGGTTGCTTAGAATATACCAGGTACGGAACAAAAGAATCC
ATTTGGTAATAGATCGAATAAAAAAAATTCTATTTTGATTTTCTATTGAT
CTGTGAATAGTATTCAACTAGACTTTACAAGAATTTAAGGGAAATGAATG
TGATAACACATAATGAATGTGATAACACATAAAAAGTCGAATTGGGATTG
CTGTTCCTAGTTATAAAGATTTGTTATTGACGCGCCACGGCAATTGCACC
TATTAAAGCAACTAAAAGAATTATTGAAACGAGTTCAAATGGAAGAAAAA
AGTCTGTTGATAAATGAATTCCAATTTGTTGACTATTACTTATCAAATCT
TGTTCAATAATCTGGTTGGCTCGTGTAGTCCAAATAATCCCGTACCACGA
TGTATCGAGAATAGTAGTGATTAGCGAAAAAAAAATACTTGTACAAACCA
GAGAAGTAAGACCATCGCCAATAGTCCAAAGATTCAACTGAAAATCTTTG
GAATAGTCTGAGCCGTTCATGAACATTACAGCAAATATGATTAAAACATT
TACAGCTCCCACGTAAATAAGGAGTTGCGCGGCAGCTACAAAATGGGAAT
TTGATAGAATATAGAATAATGATATACAAACAAGAACCAATCCCAAGGAA
AAGGCAGAATAAATTGGGTTGGTAAATAATACCACTCCCAGACCTCCTAA
TATAAGACCCGATCCCAGAANAACTAAAATAAAATCGTGTATTGGTCC
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