CV712218

Overview
NameCV712218
Unique NameCV712218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712218 vs. ExPASy Swiss-Prot
Match: CLPB2_ANASP (Chaperone protein clpB 2 OS=Anabaena sp. (strain PCC 7120) GN=clpB2 PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.285e-28
Identity = 59/95 (62.11%), Postives = 82/95 (86.32%), Query Frame = 2
Query:  455 MKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEIDRVNLEMEAAERDYDL 739
            +KMEITSKP ELDEIDR +L+LEMEKLSL+ ++D AS+ERL +LE +L  LK++Q+ LN QW  EKD++++++S+KEEID+VNLE++ AER+YDL
Sbjct:  403 LKMEITSKPEELDEIDRKILQLEMEKLSLQKESDAASRERLERLEKELADLKEEQRTLNTQWQSEKDVINKLQSVKEEIDKVNLEIQQAERNYDL 497          
BLAST of CV712218 vs. ExPASy Swiss-Prot
Match: CLPB1_THEEB (Chaperone protein clpB 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.134e-27
Identity = 57/95 (60.00%), Postives = 79/95 (83.16%), Query Frame = 2
Query:  455 MKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEIDRVNLEMEAAERDYDL 739
            +KMEITSKP ELDEIDR +L+LEME+LSL+ +T  AS++RL KLE +L  LK++Q  LN QW  EK+++ R++SIKEEI++VN+E++ AER+YDL
Sbjct:  402 LKMEITSKPEELDEIDRKILQLEMERLSLQKETSAASRDRLEKLERELADLKEEQSRLNAQWQAEKEVIDRLQSIKEEIEKVNIEIQQAERNYDL 496          
BLAST of CV712218 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNE7 (Chaperone protein clpB 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB1 PE=2 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 5.399e-27
Identity = 58/95 (61.05%), Postives = 80/95 (84.21%), Query Frame = 2
Query:  455 MKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEIDRVNLEMEAAERDYDL 739
            +KMEITSKP ELDEIDR +L+LEME+LSL+ ++D AS+ERL +LE +L  LK++Q+ L+ QW  EKD+++ I+S+KEEID+VNL ++ AERDYDL
Sbjct:  403 LKMEITSKPEELDEIDRKILQLEMERLSLQKESDLASQERLQRLEKELADLKEEQRSLSSQWQAEKDVITDIQSVKEEIDQVNLLIQQAERDYDL 497          
BLAST of CV712218 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNY3 (Chaperone protein clpB 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.203e-26
Identity = 56/94 (59.57%), Postives = 76/94 (80.85%), Query Frame = 2
Query:  455 MKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEIDRVNLEMEAAERDYD 736
            +KMEITSKP ELDE+DR +L+LEME+LSL+ + D ASKERL KLE +L   K++Q +LN QW  EK ++ +IR++KE ID+VNLE++ A+RDYD
Sbjct:  403 LKMEITSKPEELDEVDRKILQLEMERLSLQRENDSASKERLEKLEKELADFKEEQSKLNGQWQSEKTVIDQIRTVKETIDQVNLEIQQAQRDYD 496          
BLAST of CV712218 vs. ExPASy Swiss-Prot
Match: CLPB_GLOVI (Chaperone protein clpB OS=Gloeobacter violaceus GN=clpB PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.680e-26
Identity = 53/95 (55.79%), Postives = 79/95 (83.16%), Query Frame = 2
Query:  455 MKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEIDRVNLEMEAAERDYDL 739
            +KMEITSKP  LDE+DR +L+LEME+LSL  ++D AS++RL +LE +L  LK++Q+ LN QW  EKD++ +++++KEEID+VN++++ AERDYDL
Sbjct:  404 LKMEITSKPEALDEVDRKILQLEMERLSLAKESDAASRDRLERLEKELADLKEEQRSLNAQWQAEKDIIDQVQAVKEEIDQVNVQIQQAERDYDL 498          
BLAST of CV712218 vs. ExPASy Swiss-Prot
Match: CLPB_PLEBO (Chaperone protein clpB OS=Plectonema boryanum GN=clpB PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.796e-26
Identity = 55/95 (57.89%), Postives = 75/95 (78.95%), Query Frame = 2
Query:  455 MKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEIDRVNLEMEAAERDYDL 739
            +KMEITSKP ELDE+DR VL+LEME+LSL+ + D  S++RL +LE +L   K+ Q +LN QW  EK +++ ++ +KEEIDRVNLE++ AERDYDL
Sbjct:  404 LKMEITSKPEELDEVDRKVLQLEMERLSLQKENDAGSRDRLERLERELADFKEDQSKLNAQWQAEKSVITDLQKLKEEIDRVNLEIQQAERDYDL 498          
BLAST of CV712218 vs. ExPASy Swiss-Prot
Match: CLPB_PROMA (Chaperone protein clpB OS=Prochlorococcus marinus GN=clpB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.508e-24
Identity = 52/95 (54.74%), Postives = 76/95 (80.00%), Query Frame = 2
Query:  455 MKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEIDRVNLEMEAAERDYDL 739
            +KMEITSKP ELDEIDR +++L+MEKLSLK +++ AS+E+L+ +++ LN LK KQ  LN QW  EK+ ++ +  +KEEI++V L++E A+RDYDL
Sbjct:  402 LKMEITSKPEELDEIDRKIIQLQMEKLSLKRESNLASQEKLNAIDNGLNELKSKQSSLNKQWQEEKESINTLSFLKEEIEKVQLQIEQAKRDYDL 496          
BLAST of CV712218 vs. ExPASy Swiss-Prot
Match: CLPB_PROMM (Chaperone protein clpB OS=Prochlorococcus marinus (strain MIT 9313) GN=clpB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.587e-24
Identity = 54/95 (56.84%), Postives = 72/95 (75.79%), Query Frame = 2
Query:  455 MKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEIDRVNLEMEAAERDYDL 739
            +KMEITSKP E+DEIDR +++LEMEKLSL  ++D  SKERL KLE +L  L ++Q  LN QW +EK  +  + S+KEEI+RV L++E A+R YDL
Sbjct:  402 LKMEITSKPEEIDEIDRKIVQLEMEKLSLGRESDSVSKERLEKLERELAELAEQQSALNAQWQQEKGAIDDLSSLKEEIERVQLQVEQAKRSYDL 496          
BLAST of CV712218 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNPX (Chaperone protein clpB 1 OS=Synechococcus sp. (strain WH8102) GN=clpB1 PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.773e-23
Identity = 51/95 (53.68%), Postives = 74/95 (77.89%), Query Frame = 2
Query:  455 MKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEIDRVNLEMEAAERDYDL 739
            +KMEITSKP ++DEIDR +L+LEMEKLSL  ++D AS+ERL ++E +L  L ++Q  LN QW  EK  + ++ ++KEEI+RV L++E A+R+YDL
Sbjct:  402 LKMEITSKPEQIDEIDRKILQLEMEKLSLGRESDSASQERLQRIERELAELGEQQSSLNAQWQSEKGAIDQLSALKEEIERVQLQVEQAKRNYDL 496          
BLAST of CV712218 vs. ExPASy Swiss-Prot
Match: CLPB_PROMP (Chaperone protein clpB OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20
Identity = 48/95 (50.53%), Postives = 70/95 (73.68%), Query Frame = 2
Query:  455 MKMEITSKPIELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEHDLNSLKQKQKELNDQWSREKDLMSRIRSIKEEIDRVNLEMEAAERDYDL 739
            + M ITSKP E+DEIDR VL+LEME LSL+ ++D  S ERL ++ ++L+ LK +Q ELN QW +EK+ +  I ++KEEI+   L++E A+R +DL
Sbjct:  399 LNMIITSKPEEIDEIDRKVLQLEMENLSLQRESDNFSLERLKRINNELHDLKIRQSELNHQWQKEKEEIDEISNLKEEIESTQLKIEQAKRSFDL 493          
The following BLAST results are available for this feature:
BLAST of CV712218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
CLPB2_ANASP1.285e-2862.11Chaperone protein clpB 2 OS=Anabaena sp. (strain P... [more]
CLPB1_THEEB4.134e-2760.00Chaperone protein clpB 1 OS=Thermosynechococcus el... [more]
CLPB1_SYNE75.399e-2761.05Chaperone protein clpB 1 OS=Synechococcus elongatu... [more]
CLPB2_SYNY31.203e-2659.57Chaperone protein clpB 2 OS=Synechocystis sp. (str... [more]
CLPB_GLOVI2.680e-2655.79Chaperone protein clpB OS=Gloeobacter violaceus GN... [more]
CLPB_PLEBO7.796e-2657.89Chaperone protein clpB OS=Plectonema boryanum GN=c... [more]
CLPB_PROMA2.508e-2454.74Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB_PROMM5.587e-2456.84Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB1_SYNPX2.773e-2353.68Chaperone protein clpB 1 OS=Synechococcus sp. (str... [more]
CLPB_PROMP1.288e-2050.53Chaperone protein clpB OS=Prochlorococcus marinus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001B09_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712218 ID=CV712218; Name=CV712218; organism=Citrus sinensis; type=EST; length=741bp
AGGTTTTTTTCCAATATCCATCTTCGCAATGGCTATGAATTCATGTCAAC
ATAAGAAGAAAAACAGAGATCCCCAAAGATTAATTGCTTAAAAAGTTGTT
TCAAGTGGAAACACCTACATTGAAAATTGTGAATCCAGAGCACCATCCAA
CCGGCTGATCAAGCAAAGTTCATGAGATTTCACACCCAGCAAGAGTCCTG
TCACTCAAAAACTGAGAACCATGTGTAGTCCATTACTCAGAAACATCAAT
CCCTTTTCGCTCCAGGTACTCCTTTGCCTCTTTTATGTCCTGCTGCAACA
ATAGTGCTTCTTGTGGACATGTTGGAAAATACATCAGACCAATTCCAACC
ATCAATAAACCATAGCATCCCAGAGACACAATAAAATAGATAGGCAGCAA
CCCTGTATGGCTACGTGGGATGACAGATGTCTGCAAGAGACCAAACCAGA
GTGCATGAAAATGGAGATAACTTCCAAGCCTATAGAGCTGGATGAGATAG
ACAGAGCTGTGCTTAAATTGGAGATGGAGAAGCTTTCTCTGAAAAATGAC
ACCGATAAGGCATCCAAAGAAAGGTTAAGCAAACTGGAACATGATCTGAA
TTCATTAAAACAGAAACAAAAAGAATTAAATGACCAGTGGAGCCGTGAGA
AAGATCTCATGAGTCGAATACGTTCAATTAAAGAAGAGATTGATAGAGTT
AACCTAGAAATGGAAGCTGCTGAGCGTGACTATGACCTGAA
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