CV712204

Overview
NameCV712204
Unique NameCV712204
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2913 contig Csv1_Contig2913:1..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712204 vs. ExPASy Swiss-Prot
Match: COPG1_ORYSJ (Coatomer subunit gamma-1 OS=Oryza sativa subsp. japonica GN=Os03g0227000 PE=2 SV=2)

HSP 1 Score: 299.286 bits (765), Expect = 1.782e-80
Identity = 154/209 (73.68%), Postives = 171/209 (81.82%), Query Frame = -2
Query:  213 PEQLLENVTVIVDXXXXXXXXXXXSKPLRSLPYDSPGQTFVAFEKPEGVPAVGKFSNMLRFIVKEVDPTTXXXXXXXXXXEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVASG 839
            PEQLLENVTV VD           SKPLRSLPYDSPGQ FVAFEKPE VPA GKFSN+L+FIVKEVD +T          EYQ+EDLE+V+ADY+++V VSNFRNAWE++ P+ ERVDEYGLG RESLAEAVSAVIS+LGMQPCEGTEVV  N+RSHTCLLSGVFIG+ KVLVRL FG+ GPKEVAMKLAVRS+D  VSD IHEIVASG
Sbjct:  676 PEQLLENVTVYVDATDAEEFSEVCSKPLRSLPYDSPGQIFVAFEKPEHVPATGKFSNVLKFIVKEVDTSTGEVDEDGVEDEYQIEDLEIVSADYMLRVAVSNFRNAWENMDPESERVDEYGLGVRESLAEAVSAVISILGMQPCEGTEVVPKNARSHTCLLSGVFIGDAKVLVRLSFGLSGPKEVAMKLAVRSDDPEVSDKIHEIVASG 884          
BLAST of CV712204 vs. ExPASy Swiss-Prot
Match: COPG2_ORYSJ (Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica GN=Os07g0201100 PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.970e-80
Identity = 153/209 (73.21%), Postives = 170/209 (81.34%), Query Frame = -2
Query:  213 PEQLLENVTVIVDXXXXXXXXXXXSKPLRSLPYDSPGQTFVAFEKPEGVPAVGKFSNMLRFIVKEVDPTTXXXXXXXXXXEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVASG 839
            PEQLLE V V VD           +K LRSLPYDSPGQTFVAFEK EGV A GKFSN+L+FIVKEVDP+T          EYQLEDLE+ +ADY++KVGVSNFRNAWES+ P+ ERVDEYGLG RESLAEAVSAVI +LGMQPCEGT+VV +NSRSHTCLLSGVFIGNVKVLVRL FG+ GPKEVAMKLAVRS+D  +SD IHEIVA+G
Sbjct:  681 PEQLLEEVVVFVDASEADEFSEVATKSLRSLPYDSPGQTFVAFEKLEGVLATGKFSNILKFIVKEVDPSTGEADDDGVEDEYQLEDLEITSADYMLKVGVSNFRNAWESMDPESERVDEYGLGARESLAEAVSAVIGILGMQPCEGTDVVPSNSRSHTCLLSGVFIGNVKVLVRLSFGLSGPKEVAMKLAVRSDDPEISDKIHEIVANG 889          
BLAST of CV712204 vs. ExPASy Swiss-Prot
Match: COPG_ARATH (Coatomer subunit gamma OS=Arabidopsis thaliana GN=At4g34450 PE=1 SV=2)

HSP 1 Score: 277.33 bits (708), Expect = 7.252e-74
Identity = 144/209 (68.90%), Postives = 161/209 (77.03%), Query Frame = -2
Query:  213 PEQLLENVTVIVDXXXXXXXXXXXSKPLRSLPYDSPGQTFVAFEKPEGVPAVGKFSNMLRFIVKEVDPTTXXXXXXXXXXEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVASG 839
            PEQLLE V VIVD           SK L SLPYDSPGQ FV FEKP GVPAVGKFSN L F+VKEVDP+T          EYQLEDLEVVA DY++KVGVSNFRNAWES+  + ERVDEYGLG RESL EAV AV+ LLGMQ CEGTE +  N+RSHTCLLSGV+IGNVKVLVR QFG+D  K++AMKL VR+ED +V++ IHEIVASG
Sbjct:  678 PEQLLERVNVIVDASEAEEFSEVTSKALNSLPYDSPGQAFVVFEKPAGVPAVGKFSNTLTFVVKEVDPSTGEAEDDGVEDEYQLEDLEVVAGDYMVKVGVSNFRNAWESMDEEDERVDEYGLGQRESLGEAVKAVMDLLGMQTCEGTETIPLNARSHTCLLSGVYIGNVKVLVRAQFGMDSSKDIAMKLTVRAEDVSVAEAIHEIVASG 886          
BLAST of CV712204 vs. ExPASy Swiss-Prot
Match: COPG2_BOVIN (Coatomer subunit gamma-2 OS=Bos taurus GN=COPG2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.870e-29
Identity = 78/204 (38.24%), Postives = 112/204 (54.90%), Query Frame = -2
Query:  234 EQLLENVTVIVDXXXXXXXXXXXSKPLRSLPYDSPGQTFVAFEKPE--GVPAVGKFSNMLRFIVKEVDPTTXXXXXXXXXXEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGI-DGPKEVAMKLAVRSEDDNVSDMI 836
            +QLLE VTV V+             P  SLPY+ PG  +     PE   + A G FS  ++F V++ DP T          EY LEDLEV  +D++ KV   NF  AWE +G  FE+ + + L   ++L EAV+ +I+ LGMQPCE ++ V  N  SH+  L+GV+ G   +LVR +  + DG   V M++ VRS++    D+I
Sbjct:  668 DQLLEKVTVQVEPSEAYEVLCCVPAP--SLPYNQPGVCYTLVRLPEDDSIAAAGTFSCTMKFTVRDCDPDTGVPTEEGYDDEYVLEDLEVTVSDHIQKVMKPNFAAAWEEVGNTFEKEETFALSSTKTLEEAVNNIITFLGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRLALADG---VTMQVTVRSKEGTPVDVI 866          
BLAST of CV712204 vs. ExPASy Swiss-Prot
Match: COPG_HUMAN (Coatomer subunit gamma OS=Homo sapiens GN=COPG PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.441e-29
Identity = 78/203 (38.42%), Postives = 111/203 (54.68%), Query Frame = -2
Query:  234 EQLLENVTVIVDXXXXXXXXXXXSKPLRSLPYDSPGQ--TFVAFEKPEGVPAVGKFSNMLRFIVKEVDPTTXXXXXXXXXXEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMI 836
            +Q LENVTV ++             P RSLPY+ PG   T VA  K +       FS M++F VK+ DPTT          EY LEDLEV  AD++ KV   NF  AW+ +G +FE+ + + L   ++L EAV  ++  LGM PCE ++ V +N  +HT LL+GVF G   +LVR +  +     V M++  RS ++   D+I
Sbjct:  671 DQTLENVTVQMEPTEAYEVLCYV--PARSLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETDDEGYEDEYVLEDLEVTVADHIQKVMKLNFEAAWDEVGDEFEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLL--LDTVTMQVTARSLEELPVDII 869          
BLAST of CV712204 vs. ExPASy Swiss-Prot
Match: COPG2_HUMAN (Coatomer subunit gamma-2 OS=Homo sapiens GN=COPG2 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.212e-28
Identity = 76/204 (37.25%), Postives = 111/204 (54.41%), Query Frame = -2
Query:  234 EQLLENVTVIVDXXXXXXXXXXXSKPLRSLPYDSPGQTFVAFEKPEGVPAV--GKFSNMLRFIVKEVDPTTXXXXXXXXXXEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGI-DGPKEVAMKLAVRSEDDNVSDMI 836
            +QLLE VTV ++             P  SLPY+ PG  +     P+  P    G FS  ++F V++ DP T          EY LEDLEV  +D++ KV   NF  AWE +G  FE+ + + L   ++L EAV+ +I+ LGMQPCE ++ V  N  SH+  L+G+F G   +LVR +  + DG   V M++ VRS++    D+I
Sbjct:  668 DQLLEKVTVQMEPSDSYEVLSCIPAP--SLPYNQPGICYTLVRLPDDDPTAVAGSFSCTMKFTVRDCDPNTGVPDEDGYDDEYVLEDLEVTVSDHIQKVLKPNFAAAWEEVGDTFEKEETFALSSTKTLEEAVNNIITFLGMQPCERSDKVPENKNSHSLYLAGIFRGGYDLLVRSRLALADG---VTMQVTVRSKERTPVDVI 866          
BLAST of CV712204 vs. ExPASy Swiss-Prot
Match: COPG2_XENTR (Coatomer subunit gamma-2 OS=Xenopus tropicalis GN=copg2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.583e-28
Identity = 77/204 (37.75%), Postives = 112/204 (54.90%), Query Frame = -2
Query:  234 EQLLENVTVIVDXXXXXXXXXXXSKPLRSLPYDSPGQTFVAFEKPEGVPAVGK--FSNMLRFIVKEVDPTTXXXXXXXXXXEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGI-DGPKEVAMKLAVRSEDDNVSDMI 836
            +QLLE VTV ++             P  SLPY+ PG ++     P+  P      FS  ++F+V++ DP T          EY LEDLEV  +D++ K+   NF  AWE IG  +E+ + + L   +SL EAV+ +I  LGMQPCE ++ V  N  SH   LSGV+ G   VLVR +  + DG   V M++ VRS+D+  +++I
Sbjct:  669 DQLLEKVTVQMEPSEAYEVVHYVPAP--SLPYNQPGISYTLVRLPDDDPTAVSCTFSCTMKFVVRDCDPQTGVPDDEGYSDEYVLEDLEVTLSDHIQKILKPNFGAAWEEIGDTYEKEETFALTTTKSLEEAVNNIIKFLGMQPCERSDKVPENKNSHVLYLSGVYRGGHDVLVRSRLALADG---VTMQVTVRSQDETPANVI 867          
BLAST of CV712204 vs. ExPASy Swiss-Prot
Match: COPG_RAT (Coatomer subunit gamma OS=Rattus norvegicus GN=Copg PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.068e-28
Identity = 76/203 (37.44%), Postives = 110/203 (54.19%), Query Frame = -2
Query:  234 EQLLENVTVIVDXXXXXXXXXXXSKPLRSLPYDSPGQ--TFVAFEKPEGVPAVGKFSNMLRFIVKEVDPTTXXXXXXXXXXEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMI 836
            +Q LENVTV ++             P+RSLPY+ PG   T VA  K +       FS +++F VK+ DP T          EY LEDLEV  AD++ KV   NF  AW+ +G +FE+ + + L   ++L EAV  ++  LGM PCE ++ V  N  +HT LL+GVF G   +LVR +  +     V M++  RS ++   D+I
Sbjct:  671 DQTLENVTVQMEPTEAYEVLSYV--PVRSLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPNTGEIDEEGYEDEYVLEDLEVTVADHIQKVMKVNFEAAWDEVGDEFEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPENKNTHTLLLAGVFRGGHDILVRSRLLL--LDTVTMQVTARSSEELPVDII 869          
BLAST of CV712204 vs. ExPASy Swiss-Prot
Match: COPG_BOVIN (Coatomer subunit gamma OS=Bos taurus GN=COPG PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.700e-28
Identity = 75/203 (36.95%), Postives = 111/203 (54.68%), Query Frame = -2
Query:  234 EQLLENVTVIVDXXXXXXXXXXXSKPLRSLPYDSPGQ--TFVAFEKPEGVPAVGKFSNMLRFIVKEVDPTTXXXXXXXXXXEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMI 836
            +Q LENVTV ++             P RSLPY+ PG   T VA  K +       FS +++F VK+ DPTT          EY LEDLEV  AD++ KV   NF  AW+ +G +F++ + + L   ++L EAV  ++  LGM PCE ++ V +N  +HT LL+GVF G   +LVR +  +     V M++  RS ++   D++
Sbjct:  671 DQTLENVTVQMEPSEAYEVLCYV--PARSLPYNQPGTCYTLVALPKEDPTAVACTFSCVMKFTVKDCDPTTGEADDEGYEDEYVLEDLEVTIADHIQKVMKLNFEAAWDEVGDEFQKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLL--LDTVTMQVTARSSEELPVDIV 869          
BLAST of CV712204 vs. ExPASy Swiss-Prot
Match: COPG2_DANRE (Coatomer subunit gamma-2 OS=Danio rerio GN=copg2 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.527e-28
Identity = 71/179 (39.66%), Postives = 100/179 (55.87%), Query Frame = -2
Query:  234 PLRSLPYDSPGQTFVAFEKPEGVPAVGK--FSNMLRFIVKEVDPTTXXXXXXXXXXEYQLEDLEVVAADYVMKVGVSNFRNAWESIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGI-DGPKEVAMKLAVRSEDDNVSDMI 761
            P  +LPY  PG  +     PE  P      FS  ++++V++ DP T          EY LEDLEV  AD++ KV   NF  AW+ +G + E+ + + L    +L EAV+ ++S LGMQPCE ++ V  N  SH   L+GVF G   VLVR +  + DG   V +++ VRS DDNV D+I
Sbjct:  693 PAANLPYSQPGSCYSLVRLPEDDPTAVSCTFSCTMKYLVRDCDPNTGEPDDDGYDDEYVLEDLEVTVADHIQKVLKPNFAAAWDEVGDECEKEETFALATVRTLDEAVNNIVSFLGMQPCERSDKVPENKNSHVLFLAGVFRGGHDVLVRARLALADG---VTIQVTVRSTDDNVVDVI 868          
The following BLAST results are available for this feature:
BLAST of CV712204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
COPG1_ORYSJ1.782e-8073.68Coatomer subunit gamma-1 OS=Oryza sativa subsp. ja... [more]
COPG2_ORYSJ3.970e-8073.21Coatomer subunit gamma-2 OS=Oryza sativa subsp. ja... [more]
COPG_ARATH7.252e-7468.90Coatomer subunit gamma OS=Arabidopsis thaliana GN=... [more]
COPG2_BOVIN1.870e-2938.24Coatomer subunit gamma-2 OS=Bos taurus GN=COPG2 PE... [more]
COPG_HUMAN5.441e-2938.42Coatomer subunit gamma OS=Homo sapiens GN=COPG PE=... [more]
COPG2_HUMAN1.212e-2837.25Coatomer subunit gamma-2 OS=Homo sapiens GN=COPG2 ... [more]
COPG2_XENTR1.583e-2837.75Coatomer subunit gamma-2 OS=Xenopus tropicalis GN=... [more]
COPG_RAT2.068e-2837.44Coatomer subunit gamma OS=Rattus norvegicus GN=Cop... [more]
COPG_BOVIN2.700e-2836.95Coatomer subunit gamma OS=Bos taurus GN=COPG PE=1 ... [more]
COPG2_DANRE3.527e-2839.66Coatomer subunit gamma-2 OS=Danio rerio GN=copg2 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001B02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712204 ID=CV712204; Name=CV712204; organism=Citrus sinensis; type=EST; length=843bp
GCCCCCCCTTTTAGAGATTATACAAAGAATATTATTATGCATTCGACGGA
CCCAAATAATTCCCAAAGCACCAATAACCCTCAATCCAGGAATCCAAAAG
TTTTTTCTACAAGCTCGTCTTTACTGCAGCCATCTGCCTAATCTCGTTCA
AAAAAAACTAAAAAAGGCCAGAGTACAGGTAAAAGGAAAAATGATGATTG
CTTTCAGTTTCAGCCGCTAGCTACAATCTCGTGAATCATGTCGCTGACAT
TATCATCCTCGGATCTAACGGCCAGTTTCATTGCAACCTCCTTTGGACCA
TCAATTCCAAACTGCAAACGCACTAGGACCTTGACGTTGCCAATGAAAAC
ACCAGACAGTAGACATGTATGTGACCTTGAATTGTTTGCAACAACTTCCG
TGCCCTCACAAGGCTGCATGCCAAGAAGGCTGATGACAGCACTAACAGCT
TCAGCCAGACTTTCCCTTGGGCCAAGGCCATATTCATCTACACGCTCAAA
GTCTGGGCCTATGCTTTCCCATGCATTCCTGAAATTGGAGACCCCTACTT
TCATCACGTAATCAGCTGCAACAACCTCAAGGTCCTCTAACTGATATTCA
TCTTCAACACCATCATCCTCTACGTCACCAGTTGTTGGATCAACCTCTTT
AACAATGAATCTCAACATGTTAGAAAATTTTCCAACAGCTGGGACTCCTT
CTGGTTTTTCAAATGCCACAAAGGTCTGTCCGGGTGAATCATAAGGAAGA
GATCTCAGAGGTTTTGACGCTAGTTCAGCAAATTCCTCAGCTTCAGAAGC
ATCCACAATAACAGTGACATTTTCCAGTAGTTGCTCTGGTCCT
back to top