CV712200

Overview
NameCV712200
Unique NameCV712200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712200 vs. ExPASy Swiss-Prot
Match: CSLE2_ORYSJ (Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 48/88 (54.55%), Postives = 62/88 (70.45%), Query Frame = 1
Query:  583 PLFETKRAKGRVIR---RLFAASIFVGIGFIVVYRLSHRPRNGEDG--RWAWIGLLGAELWFSLYWVLTQALRWNCVYRRTFKDRLSQ 831
            PLF T++  GR+     R+ AA++F G+  I +YR +H P  G DG  RWAW+G+L AELWF  YWVLT ++RW  VYRRTFKDRL+Q
Sbjct:   18 PLFATEKP-GRMAMAAYRVSAATVFAGVLLIWLYRATHLPPGGGDGVRRWAWLGMLAAELWFGFYWVLTLSVRWCPVYRRTFKDRLAQ 104          
BLAST of CV712200 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.835e-17
Identity = 42/83 (50.60%), Postives = 60/83 (72.29%), Query Frame = 1
Query:  586 LFETKRAKGRVIRRLFAASIFVGIGFIVVYRLSHRPRNGEDGRWAWIGLLGAELWFSLYWVLTQALRWNCVYRRTFKDRLSQR 834
            LF T++  GR + RL AA++  GI  ++ YR +  P  GE GR AW+G+  AELWF++YWV+TQ++RW  V RRTFK+RL++R
Sbjct:   11 LFATEKVGGRAVYRLQAATVAAGILLVLYYRATRVPAAGE-GRAAWLGMAAAELWFAVYWVITQSVRWCPVRRRTFKNRLAER 92          
BLAST of CV712200 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.249e-17
Identity = 40/84 (47.62%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  583 PLFETKRAKGRVIRRLFAASIFVGIGFIVVYRLSHRPRNGEDGRWAWIGLLGAELWFSLYWVLTQALRWNCVYRRTFKDRLSQR 834
            PLF T+   GR + R+ AA++  GI  ++ YR +  P  GE GR AW+G+  AELWF++YWV+ Q++RW    RRTF+DRL++R
Sbjct:   15 PLFTTEELGGRAVYRVQAATVAAGILLVLYYRATRVPAAGE-GRAAWLGMAAAELWFAVYWVIAQSVRWRPFRRRTFRDRLAER 97          
BLAST of CV712200 vs. ExPASy Swiss-Prot
Match: CSLE1_ARATH (Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.456e-13
Identity = 43/86 (50.00%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  583 PLFETKRAKGRVIR-RLFAASIFVGIGFIVVYRLSHRPRNGED-GRWAWIGLLGAELWFSLYWVLTQALRWNCVYRRTFKDRLSQR 834
            PLFET+R  GRVI  R F+AS+FV I  I  YR+     N     R  W  +   E+WF LYWV+TQ+ RWN V+R  F DRLS+R
Sbjct:   18 PLFETRRRTGRVIAYRFFSASVFVCICLIWFYRIGEIGDNRTVLDRLIWFVMFIVEIWFGLYWVVTQSSRWNPVWRFPFSDRLSRR 103          
The following BLAST results are available for this feature:
BLAST of CV712200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CSLE2_ORYSJ3.956e-1954.55Cellulose synthase-like protein E2 OS=Oryza sativa... [more]
CSLE6_ORYSJ2.835e-1750.60Cellulose synthase-like protein E6 OS=Oryza sativa... [more]
CSLE1_ORYSJ8.249e-1747.62Cellulose synthase-like protein E1 OS=Oryza sativa... [more]
CSLE1_ARATH1.456e-1350.00Cellulose synthase-like protein E1 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A24_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712200 ID=CV712200; Name=CV712200; organism=Citrus sinensis; type=EST; length=847bp
GAAGGAAACGGCAAGATGCCAATTAAGCTCTCAGAGAGCTTAAGCATTAA
TTTGTATTACCCCTGTCTGTTGGTGCCTGTTTTGCATGCTTTGTATTGAA
TTTTCTTTTCTTTTTCTCTCTTACAACAATTTCTTTTCATGGCGATTATG
CCACTTGCAGCCAGCATACCAAAAACAAACTAATTGTTTCTGCCCTTGGC
ATAATTTTTCCTACCAATAATGCTTAAAAAAATGCTAAAGCCAACTTTTG
GCCTCTTGTTTTTTTATTTTAATTTCAAGTCTATCTTTCTAATTCACTAG
CATGTCCTCTGACGGTATGCTGAAAGCAACTTTGTGGGAATTTATCTCTT
TAACAAGGGTCTTGGTGAAAATTCATTCAGAATATGTCAGGAGGACCGCC
GCCACCCACTCCATTATTGTTGTTGTTATTATTATTTGCAAAGATTCCTT
AGTTACAGCATTTAATTAACTATCAGAGTAGCTAAACAAAAAGTGCTTTA
GATCAGTCCATTAACCAATACCAAAGCATATTGCTGTTGAATTCACTTTT
GGAAGTAAGAAATGGGTAGTGATGCGTATGTTCCTCTGTTCGAAACAAAG
AGAGCCAAGGGAAGAGTGATACGTAGACTTTTTGCAGCGTCTATTTTTGT
GGGAATAGGTTTCATAGTAGTTTATAGATTGAGTCACAGGCCAAGAAATG
GAGAAGATGGGAGATGGGCATGGATTGGTTTGTTGGGAGCTGAGCTATGG
TTTAGTCTTTACTGGGTTCTTACTCAAGCCCTTAGATGGAACTGTGTCTA
CCGGCGCACCTTCAAGGACAGGCTCTCACAGAGGTCCCTGTCTCTTC
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