CV712196

Overview
NameCV712196
Unique NameCV712196
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712196_ssr786 microsatellite CV712196_ssr786:786..797. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV712196 vs. ExPASy Swiss-Prot
Match: EBP2_ARATH (Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana GN=At3g22660 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.849e-61
Identity = 123/192 (64.06%), Postives = 140/192 (72.92%), Query Frame = 2
Query:  182 KLAEPSKQAVYNRDGLEEKLQDISWPENAGWIHKLTIDIDQEQEVDVNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRRLLSEQXXXXXXXXXXXXXXXXXXXXXXQVQKTKERAKQKKEEIESVKKWRKQRQQSGFAGEVDKGELDLAFEGGKSFER-SNKKRPGVSP 754
            KLAEP+K A+YNRDGL +KLQDISWPE+  W HKLT++IDQ   VDVNDDL RE +FYTQALEGTR+AF KL  MG+ FLRPA+YYAEMVKSD HMEKVK RLL E+                      Q QK KERAK+KK+ IESVKKWRKQRQQSGF+ +  + ELD  FE GKSF+R   KKRPGVSP
Sbjct:   41 KLAEPTKTAIYNRDGLLDKLQDISWPEDVDWTHKLTVEIDQGGAVDVNDDLARETAFYTQALEGTREAFGKLNEMGVNFLRPANYYAEMVKSDVHMEKVKSRLLHEKKQIEESEERRKARDNKRMAKEVQSQKMKERAKEKKDNIESVKKWRKQRQQSGFSDKAGEPELD--FESGKSFQRGGGKKRPGVSP 230          
BLAST of CV712196 vs. ExPASy Swiss-Prot
Match: EBP2_SCHPO (Probable rRNA-processing protein ebp2 OS=Schizosaccharomyces pombe GN=ebp2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.651e-17
Identity = 57/196 (29.08%), Postives = 89/196 (45.41%), Query Frame = 2
Query:  185 LAEPSKQAVYNRDGLEEKLQDISWPENAGWIHKLTIDIDQEQEVD-VNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRRLLSEQXXXXXXXXXXXXXXXXXXXXXXQVQKTKERAKQKKEEIESVKKWRKQRQQSGFAGEVDKGELDLAFEGG-----KSFERSNKKRPGVSP 754
            L    K A+ N   LE   + I +P++  ++    +   +   ++ V DDL RE +FY Q +   + AF KL+   +   RP DY+AEM+KSD HMEKV++ L+ E                       Q+ K +ER ++KKE +E +   +++        E D    D+A         K   RS K RP  +P
Sbjct:   86 LIRKRKLAINNTVALENIYERIKYPDDISFVENQAVTTKEPIIIENVEDDLARELAFYKQGVSSVKAAFAKLREANVLISRPHDYFAEMLKSDDHMEKVRQELIKEATAKKLSQQAKKQRELKKFGKQVQLAKQEERQREKKETLEKINLLKRKHTGGDLTTEDD---FDIALSSASADTFKKGSRSTKSRPQPNP 278          
BLAST of CV712196 vs. ExPASy Swiss-Prot
Match: EBP2_YEAST (rRNA-processing protein EBP2 OS=Saccharomyces cerevisiae GN=EBP2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.994e-16
Identity = 55/189 (29.10%), Postives = 98/189 (51.85%), Query Frame = 2
Query:  200 KQAVYNRDGLEEKLQDIS--WPENAGWIHK-LTIDIDQEQEV-DVNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRRLLSEQXXXXXXXXXXXXXXXXXXXXXXQVQKTKERAKQKKEEIESVKKWRKQRQQSGFAGEVDKGELDLAFE---GGKSFERS--NKKR 739
            K  V N   ++  L+ +   W +++   H+ +T + + ++ + D+ DD +RE +FY Q+L+    A ++L+ + +PF RP DY+AEMVKSD HM+K+K +L+ E                       Q    ++R  +K+E +E +K  + +R+ +    E+D  E ++  E    GK F+R   N KR
Sbjct:  192 KLTVNNTKAMKHALERVQLPWKKHSFQEHQSVTSETNTDEHIKDIYDDTERELAFYKQSLDAVLVARDELKRLKVPFKRPLDYFAEMVKSDEHMDKIKGKLIEEASDKKAREEARRQRQLKKFGKQVQNATLQKRQLEKRETLEKIKSLKNKRKHN----EIDHSEFNVGVEEEVEGKRFDRGRPNGKR 376          
BLAST of CV712196 vs. ExPASy Swiss-Prot
Match: EBP2_CAEEL (Probable rRNA-processing protein EBP2 homolog OS=Caenorhabditis elegans GN=C18A3.3 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.418e-15
Identity = 51/155 (32.90%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  200 KQAVYNRDG-LEEKLQDISWPENAGWIHKLTIDIDQEQEVDV---NDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRRLLSEQXXXXXXXXXXXXXXXXXXXXXXQVQKTKERAKQKKEEIESVKKWRKQRQQ 652
            K+ + N+   ++EKL +I+  ++  W+  L + +    E+D    NDD +RE +FY QA +  + A+ +L ++G+  LRP DYYAEM KSD HM+KV++RLL  Q                      Q +    +  +KK   E+VKK +K  +Q
Sbjct:   82 KRPIINKSAEMKEKLAEIT--KDLPWVETLEV-VTPHSEMDKKVENDDFQRELNFYKQAEKAVQIAYPRLLNLGIKVLRPTDYYAEMAKSDTHMQKVRKRLLGIQEMKERQEAFRRIREEKKFAVKVQKEVLAAKNTEKKNLAEAVKKHKKGMKQ 233          
BLAST of CV712196 vs. ExPASy Swiss-Prot
Match: EBP2_MOUSE (Probable rRNA-processing protein EBP2 OS=Mus musculus GN=Ebna1bp2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.216e-12
Identity = 53/197 (26.90%), Postives = 91/197 (46.19%), Query Frame = 2
Query:  191 EPSKQAVYNRDGLEEKLQDISWPENAGWIHKLTIDI----------------DQEQEVDVNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRRLLSEQXXXXXXXXXXXXXXXXXXXXXXQVQKTKERAKQKKEEIESVKKWRKQRQQSGFAGEVDKGELDLAFEGGKSFERSNK 733
            E  K+AV +  GL++ L +     +  W+ +L + +                DQ++ V+  DD +RE SFY QA         +L  + +P  RP DY+AEM KSD  M+K++++L ++Q                      Q +  ++R ++K   + ++KK++K     GF+ ++D  E D      K  ERS K
Sbjct:   41 EKPKKAVNDVSGLKQCLAEFR--RDLEWVERLDVTLGPVPEVSETQPTPQNQDQKKGVNPEDDFQREMSFYRQAQAAVLAVLPRLHQLQVPTKRPTDYFAEMAKSDQQMQKIRQKLQTKQAAMEKSEKAKQLRALRKYGKKVQTEVLQKRQREKAHMMNAIKKYQK-----GFSDKLDFLEGD-----QKPVERSAK 225          
BLAST of CV712196 vs. ExPASy Swiss-Prot
Match: EBP2_HUMAN (Probable rRNA-processing protein EBP2 OS=Homo sapiens GN=EBNA1BP2 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.033e-12
Identity = 50/205 (24.39%), Postives = 94/205 (45.85%), Query Frame = 2
Query:  191 EPSKQAVYNRDGLEEKLQDISWPENAGWIHKLTIDID----------------QEQEVDVNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRRLLSEQXXXXXXXXXXXXXXXXXXXXXXQVQKTKERAKQKKEEIESVKKWRKQRQQSGFAGEVD--KGELDLAFEGGKSFERSNKKRPGVS 751
            E  K+AV + +GL++ L +     +  W+ +L + +                  ++ VD  DD +RE SFY QA         +L  + +P  RP DY+AEM KSD  M+K++++L ++Q                      Q +  ++R ++K   + ++KK++K     GF+ ++D  +G+     +  K+  +  + R G S
Sbjct:   41 EGPKKAVNDVNGLKQCLAEFK--RDLEWVERLDVTLGPVPEIGGSEAPAPQNKDQKAVDPEDDFQREMSFYRQAQAAVLAVLPRLHQLKVPTKRPTDYFAEMAKSDLQMQKIRQKLQTKQAAMERSEKAKQLRALRKYGKKVQTEVLQKRQQEKAHMMNAIKKYQK-----GFSDKLDFLEGDQKPLAQRKKAGAKGQQMRKGPS 238          
BLAST of CV712196 vs. ExPASy Swiss-Prot
Match: EBP2_XENLA (Probable rRNA-processing protein EBP2 OS=Xenopus laevis GN=ebna1bp2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.029e-11
Identity = 40/164 (24.39%), Postives = 74/164 (45.12%), Query Frame = 2
Query:  191 EPSKQAVYNRDGLEEKLQDISWPENAGWIHKLTIDID--------------QEQEVDVNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRRLLSEQXXXXXXXXXXXXXXXXXXXXXXQVQKTKERAKQKKEEIESVKKWRK 640
            E  K+   +  GL++ L+D+       W+ +L + +D                 +++  DD +RE  FY QA      +  +L+ + +   RP DY+AEM K+D HM+K++ +L  +Q                      QV+  ++R K+K   +  +KK++K
Sbjct:   44 EGKKKPFNDASGLKQSLKDLK--NELPWVERLDVTVDPVVDTTGQNGQTDPNTSDINAEDDFQREMCFYRQAQAAVLYSLPRLRKLKVATKRPDDYFAEMAKTDQHMQKIRHKLQLKQASMEKSEKAKQLRALRKYGKKVQVEVLQKRQKEKSAMVTQIKKYQK 205          
The following BLAST results are available for this feature:
BLAST of CV712196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
EBP2_ARATH1.849e-6164.06Probable rRNA-processing protein EBP2 homolog OS=A... [more]
EBP2_SCHPO3.651e-1729.08Probable rRNA-processing protein ebp2 OS=Schizosac... [more]
EBP2_YEAST8.994e-1629.10rRNA-processing protein EBP2 OS=Saccharomyces cere... [more]
EBP2_CAEEL3.418e-1532.90Probable rRNA-processing protein EBP2 homolog OS=C... [more]
EBP2_MOUSE1.216e-1226.90Probable rRNA-processing protein EBP2 OS=Mus muscu... [more]
EBP2_HUMAN6.033e-1224.39Probable rRNA-processing protein EBP2 OS=Homo sapi... [more]
EBP2_XENLA1.029e-1124.39Probable rRNA-processing protein EBP2 OS=Xenopus l... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A22_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712196 ID=CV712196; Name=CV712196; organism=Citrus sinensis; type=EST; length=837bp
CCTTTTGCGGAGGTTTTGTTTTCAGTCTTCAGGAGCCGCATCAAAAAGGT
TTGTTATAATGGGGCTTGCTCGTAAAGAATCAACCTTTTCTGATGAGGAT
GGATTTGAAGATGAAGATGTGAGTGAGCTCAATGAGGAAGTTTCTGAATC
TGAATCAGATTCAGAAGGGGAGGAAGATGTGAAATTGGCCGAGCCTTCAA
AACAGGCCGTGTACAACAGAGATGGTCTTGAGGAGAAACTTCAAGATATT
AGTTGGCCGGAAAATGCTGGGTGGATACATAAGCTTACCATTGATATTGA
TCAAGAGCAAGAGGTGGATGTGAATGATGATCTGAAAAGGGAGGCTTCTT
TCTATACACAGGCATTAGAGGGGACAAGGCAGGCCTTTGAGAAGCTTCAA
TCGATGGGGCTGCCTTTTCTTAGACCGGCTGATTATTATGCAGAGATGGT
TAAGTCGGATGCTCACATGGAAAAGGTGAAGCGCCGACTTTTGTCTGAGC
AGAAAGAGATTGAGGAGGCTGCGGAGAGAAAGAAGGCTAGAGAGGCTAAG
AAACTAGCTAAAGAGATTCAGGTCCAAAAGACAAAGGAGAGAGCGAAGCA
GAAAAAAGAGGAAATAGAATCTGTTAAGAAGTGGAGGAAGCAGAGGCAAC
AAAGTGGGTTTGCCGGGGAAGTCGACAAGGGTGAATTGGATTTGGCCTTT
GAAGGTGGGAAGTCATTTGAGAGGTCAAATAAGAAGAGACCAGGGGTGTC
TCCAGGAGATCGGTCTGGTGGGAAGGCAAGAAAAAGTGGTGGTGGTGATA
GTGGAAAGGGAAAAAAGAAGAAGAATAGAGATTTTAG
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