CV712184

Overview
NameCV712184
Unique NameCV712184
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4257 contig Csv1_Contig4257:116..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712184 vs. ExPASy Swiss-Prot
Match: EIF3K_ORYSJ (Eukaryotic translation initiation factor 3 subunit K OS=Oryza sativa subsp. japonica GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 1.103e-96
Identity = 172/223 (77.13%), Postives = 199/223 (89.24%), Query Frame = -1
Query:  177 QQHXVSFTVEQLVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRIFPIL 845
            +Q   S+TVE+LVAVNPYNPDIL DLE +VN+QV +QTY+LDANL LLRLYQFEPER+S QIV+RILIKALMAMP PDFSLCLFLIPE VQME+QFKTLIVLSHYLET RFR FWDEA+K+RNI++ VPGFEQAIQS+AIHVLSLTYQK+PR VLAEAIN++GL+LDKFLEH  AN GW++E   + SQLIVLP NEFNHPELKKN A+++P EH+TRIFP+L
Sbjct:    4 EQAAESYTVEELVAVNPYNPDILNDLEGFVNDQVSNQTYNLDANLSLLRLYQFEPERLSVQIVSRILIKALMAMPGPDFSLCLFLIPEHVQMEEQFKTLIVLSHYLETARFRQFWDEASKNRNILDVVPGFEQAIQSYAIHVLSLTYQKVPRPVLAEAINIEGLALDKFLEHHIANSGWVIE-KGARSQLIVLPRNEFNHPELKKNTAETVPFEHVTRIFPVL 225          
BLAST of CV712184 vs. ExPASy Swiss-Prot
Match: EIF3K_ARATH (Eukaryotic translation initiation factor 3 subunit K OS=Arabidopsis thaliana GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.349e-94
Identity = 172/232 (74.14%), Postives = 201/232 (86.64%), Query Frame = -1
Query:  174 MGREAQQQQQHXVSFTVEQLVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRIFPILG 869
            MG E Q  Q+   S+TVEQLVA+NP+NP+ILPDLENYVN  V SQTYSL+ NLCLLRLYQFEPERM+T IVARIL+KALMAMP PDFSLCLFLIPERVQME+QFK+LIVLSHYLETGRF+ FWDEAAK+R+I+EAVPGFEQAIQ++A H+LSL+YQK+PR+VLAEA+N+ G SLDKF+E Q  N GWI+E +  +   IVLP NEFNHPELKKN  +++PLEHI RIFPILG
Sbjct:    1 MGVEIQSPQEQS-SYTVEQLVALNPFNPEILPDLENYVN--VTSQTYSLEVNLCLLRLYQFEPERMNTHIVARILVKALMAMPTPDFSLCLFLIPERVQMEEQFKSLIVLSHYLETGRFQQFWDEAAKNRHILEAVPGFEQAIQAYASHLLSLSYQKVPRSVLAEAVNMDGASLDKFIEQQVTNSGWIVEKEGGS---IVLPQNEFNHPELKKNTGENVPLEHIARIFPILG 226          
BLAST of CV712184 vs. ExPASy Swiss-Prot
Match: EIF3K_BOVIN (Eukaryotic translation initiation factor 3 subunit K OS=Bos taurus GN=EIF3K PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.865e-28
Identity = 72/208 (34.62%), Postives = 112/208 (53.85%), Query Frame = -1
Query:  189 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 812
            L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    ++ +++E + GFE +++ F  HV+ +TYQ I R +LAE +   G   D  L+   +  GW    D+S  Q+ +    E   P   KN+ + I  + ++ I
Sbjct:   15 LKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLTDSQLKVWMSKYGW--SADES-GQIFICSQEESIKP---KNIVEKIDFDSVSSI 213          
BLAST of CV712184 vs. ExPASy Swiss-Prot
Match: EIF3K_MOUSE (Eukaryotic translation initiation factor 3 subunit K OS=Mus musculus GN=Eif3k PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.742e-28
Identity = 72/208 (34.62%), Postives = 112/208 (53.85%), Query Frame = -1
Query:  189 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 812
            L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    ++ +++E + GFE +++ F  HV+ +TYQ I R +LAE +   G   D  L+   +  GW    D+S  Q+ +    E   P   KN+ + I  + ++ I
Sbjct:   15 LKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLTDNQLKVWMSKYGW--SADES-GQVFICSQEESIKP---KNIVEKIDFDSVSSI 213          
BLAST of CV712184 vs. ExPASy Swiss-Prot
Match: EIF3K_HUMAN (Eukaryotic translation initiation factor 3 subunit K OS=Homo sapiens GN=EIF3K PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.742e-28
Identity = 72/208 (34.62%), Postives = 112/208 (53.85%), Query Frame = -1
Query:  189 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 812
            L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    ++ +++E + GFE +++ F  HV+ +TYQ I R +LAE +   G   D  L+   +  GW    D+S  Q+ +    E   P   KN+ + I  + ++ I
Sbjct:   15 LKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLSDSQLKVWMSKYGW--SADES-GQIFICSQEESIKP---KNIVEKIDFDSVSSI 213          
BLAST of CV712184 vs. ExPASy Swiss-Prot
Match: EIF3K_DANRE (Eukaryotic translation initiation factor 3 subunit K OS=Danio rerio GN=eif3k PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.422e-27
Identity = 69/208 (33.17%), Postives = 112/208 (53.85%), Query Frame = -1
Query:  189 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 812
            L  ++ YNP+ L  LE YV+ Q     Y L+ANL +L+LYQF      T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L + LET  F+ FW    ++R++++ + GFE++++ F  HV+ +TYQ I   +LAE +   G  LD  ++      GW    +    Q+ +    E   P   KN+ + I  E ++ I
Sbjct:   16 LRGIDRYNPENLATLERYVDTQARENAYDLEANLAVLKLYQFNLAYFQTTVTAQILLKALTNLPHTDFTLCKCMIDQTHQEERPIRQILYLGNLLETCHFQSFWASLEENRDLIDGITGFEESVRKFICHVVGITYQNIEYRLLAEML---GDPLDTQVKVWMNKYGWT---ENEDGQIFIHNQEESVKP---KNIVEKIDFESVSSI 214          
BLAST of CV712184 vs. ExPASy Swiss-Prot
Match: EIF3K_NEMVE (Eukaryotic translation initiation factor 3 subunit K OS=Nematostella vectensis GN=v1g170558 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.425e-27
Identity = 72/214 (33.64%), Postives = 121/214 (56.54%), Query Frame = -1
Query:  189 TVEQLV-AVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAI-NLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 824
            TV QL+  ++ YNP+ L  LE+YV+ QV    Y LDANL +L+LYQF P    T ++++IL+KALM +P  DF +C  +I + +Q +   K +I+L+  LET  F   W    +  ++V+ V GF  AI+++  +V+ +TYQ I  ++ +E +  L+G  L  +++ +    GW+   D +     +   N+  H +  KN+A+ I    +  I
Sbjct:    8 TVSQLLKGIDRYNPENLKVLEHYVHLQVHENAYDLDANLAVLKLYQFNPAYSQTSVISQILLKALMNLPNADFIMCRCVIDDAIQQDLTIKKVILLAERLETCAFTSAWQFIKEEASLVDGVTGFHDAIRNYITYVIGVTYQTIEESLASELLGGLQGAQLQDWIKAK----GWMSSDDGT-----IYVTNQEAHIK-SKNIAEKIDFASVANI 211          
BLAST of CV712184 vs. ExPASy Swiss-Prot
Match: EIF3K_XENTR (Eukaryotic translation initiation factor 3 subunit K OS=Xenopus tropicalis GN=eif3k PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.217e-27
Identity = 68/208 (32.69%), Postives = 110/208 (52.88%), Query Frame = -1
Query:  189 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 812
            L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    ++ ++++ + GFE +++ F  HV+ +TYQ I R +LAE +   G   +  L    +  GW+   +    ++ V    E   P   KN+ + I  + ++ I
Sbjct:   15 LRGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQSFWQALDENLDLIDGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLSEPQLRVWMSKYGWM---ESENGKIFVCNQEENIKP---KNIVEKIDFDSVSGI 213          
BLAST of CV712184 vs. ExPASy Swiss-Prot
Match: EIF3K_XENLA (Eukaryotic translation initiation factor 3 subunit K OS=Xenopus laevis GN=eif3k PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.217e-27
Identity = 68/208 (32.69%), Postives = 110/208 (52.88%), Query Frame = -1
Query:  189 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 812
            L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T + A++L+KAL  +P  DF+LC  +I +  Q +   + ++ L   LET  F+ FW    ++ ++++ V GFE +++ F  HV+ +TYQ I R +LAE +   G   +  L    +  GWI   +    ++ V    E   P   KN+ + I  + ++ I
Sbjct:   15 LRGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQVLLKALTNLPHTDFTLCKCMIDQAHQEDRPIRQILYLGDLLETCHFQSFWQALDENLDLIDGVTGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLSEPQLRVWMSKYGWI---ESENGKIFVCNQEENIKP---KNIVEKIDFDSVSGI 213          
BLAST of CV712184 vs. ExPASy Swiss-Prot
Match: EIF3K_DROPS (Eukaryotic translation initiation factor 3 subunit K OS=Drosophila pseudoobscura pseudoobscura GN=GA24496 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.127e-24
Identity = 70/208 (33.65%), Postives = 110/208 (52.88%), Query Frame = -1
Query:  198 EQLVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELK-KNVADSIPLEHI 818
            E L  +  YNPD L  LE Y+ +Q  + TY L+ANL +L+LYQF P  ++ +I   IL+K+L  +P  DF +   L+  +   ++  +T+I L+  LE   F  FW  A  +R +   + GF  +I+ F  HV+S+T+Q I + +L E   L G   D  LE      GW  +G      LIV+   +    ++K KN+ + I  E++
Sbjct:   17 EMLGCIERYNPDHLKTLEAYIQDQAKNNTYDLEANLAVLKLYQFNPHMLNFEITYTILLKSLTNLPHTDFVMAKCLLLPQQMKDENIQTIIDLADILERADFTLFWQRAEVNRTMFRHISGFHDSIRKFVSHVVSITFQTIKKDLLKE---LLGGIEDSTLESWIKRNGWKHQG----QDLIVVAMQD---DKIKTKNITEKIEFENV 214          
The following BLAST results are available for this feature:
BLAST of CV712184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
EIF3K_ORYSJ1.103e-9677.13Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_ARATH1.349e-9474.14Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_BOVIN2.865e-2834.62Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_MOUSE3.742e-2834.62Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_HUMAN3.742e-2834.62Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_DANRE1.422e-2733.17Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_NEMVE2.425e-2733.64Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_XENTR9.217e-2732.69Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_XENLA9.217e-2732.69Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_DROPS1.127e-2433.65Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A16_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712184 ID=CV712184; Name=CV712184; organism=Citrus sinensis; type=EST; length=872bp
TTGCAATAATAACATTGGTGTCTCATCAATTCCTCCAAGCCACTTGGGGC
TATGTTTTCAACATAAACACAAAAAGAGATTACAGCAGTCCCCAAAATTC
ACTGCAAGAGTGCTATAGCAGCTGGTTAAAACAAATGAAAATTTACCAAA
TGCCAGGATTTGAACTTCAATCAACCAAGAATGGGAAATATGCGGGTAAT
GTGTTCTAACGGGATGCTATCAGCAACATTCTTCTTCAGCTCGGGATGAT
TAAATTCATTAGGCGGCAGGACAATCAATTGGCTCGTACTTTGATCTCCT
TCAAGAATCCAGCCACAATTGGCCTTCTGGTGTTCAAGGAATTTGTCCAG
AGATAGACCTTTAAGATTGATAGCCTCGGCAAGCACAGTCCTTGGAATCT
TTTGATATGTCAATGAAAGGACATGAATTGCAAAGGACTGAATTGCTTGC
TCAAAACCTGGCACGGCTTCAACTATGTTACGATGCTTAGCTGCTTCATC
CCAGAAATGGCGGAACCTTCCTGTCTCCAAGTAGTGAGAGAGGACAATCA
GCGTCTTGAATTGATCCTCCATTTGCACTCTTTCTGGGATCAAAAAGAGA
CAGAGACTGAAATCTGGAGCTGGCATTGCCATAAGAGCCTTAATTAAAAT
GCGGGCAACAATTTGGGTACTCATTCTTTCTGGTTCAAACTGATAAAGAC
GAAGAAGGCAAAGATTTGCATCCAGACTATATGTTTGTGACAAGACCTGC
TCGTTAACGTAGTTTTCGAGATCGGGAAGGATGTCGGGATTGTAGGGATT
GACGGCGACAAGCTGCTCCACTGTGAATGAAACCTNGTGCTGTTGCTGCT
GTTGAGCCTCTCTTCCCATTTT
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