CV712169

Overview
NameCV712169
Unique NameCV712169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712169_ssr555 microsatellite CV712169_ssr555:555..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13664 contig Csv1_Contig13664:368..1194. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712169 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.781e-86
Identity = 154/227 (67.84%), Postives = 181/227 (79.74%), Query Frame = -3
Query:  145 GIVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXLGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 825
            GI+FSAVYAQMST+FV+QG  M+  IGSF +PPA+L +FD  SVI WVP+YD+ IVP+ARKFTG ++GF+E+QRMGIGLF+SVLCM+AAA+VEI RL +A +L LV+    VPIS+ WQIPQYF+LGAAEV  FIGQLEFFYDQSPDAMR            LGNYLSS ILT+VTYFTT  G+ GWI DNLN GHLDYFFWLLAGLS+ NM +Y   A +YKQKKA
Sbjct:  357 GIIFSAVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQKKA 583          
BLAST of CV712169 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 9.603e-71
Identity = 129/227 (56.83%), Postives = 168/227 (74.01%), Query Frame = -3
Query:  148 GIVFSAVYAQMSTLFVEQGMVMDTSIG-SFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXLGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKK 825
            GIVF++VY+QM T+FV QG  +D  +G +F IP ASLS FD +SV+FW P+YDK+IVP ARK+TG ERGF++LQR+GIGL +S+  M +A ++E+ RL   +   L ++  ++P++IFWQ+PQYFL+G AEV TFIGQLEFFYDQ+PDAMR             GNYLS+F++T+VT  T +GG+ GWI  NLN GHLDYFFWLLAGLS  N L+Y+  AK Y  KK
Sbjct:  339 GIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEE-TIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKK 564          
BLAST of CV712169 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.062e-69
Identity = 133/228 (58.33%), Postives = 164/228 (71.93%), Query Frame = -3
Query:  145 GIVFSAVYAQMSTLFVEQGMVMDTSIG-SFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXLGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 825
            GIVF+ VY+QMST+FV QG  MD  +G +F IP ASLS FD +SV+FW P+YD+ I+P+ARKFT  ERGF++LQRMGIGL +S+  M  A V+E+ RL   +     DQ   + +SIFWQIPQY L+G AEV TFIGQLEFFYDQ+PDAMR            LGNYLS+ ++TVV   T   GK GWIPDNLN+GHLDYFF+LLA LS  N L+Y+  +K+YK KKA
Sbjct:  339 GIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQK-QIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYKKA 565          
BLAST of CV712169 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.016e-44
Identity = 94/220 (42.73%), Postives = 144/220 (65.45%), Query Frame = -3
Query:  160 SAVYAQMSTLFVEQGMVMDTSI-GSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQ-NVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXLGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 813
            S + AQ++TLFV+QG  +D  + GSF+IPPASLS F  +S++  + +YD++ V I RKFTG  RG + LQRMGIGL   +L M  A+V E  RL++A +  L+ Q  V +P++IF  +PQ+ L+G A+    + +LEFFYDQ+P++M+            +GN++SSF+L+ V+  T   G+ GWI +NLN+  LDY++   A L++ N +L++V  K Y
Sbjct:  343 SMMLAQINTLFVKQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLEVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGR-GWILNNLNESRLDYYYLFFAVLNLVNFVLFLVVVKFY 561          
BLAST of CV712169 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.713e-40
Identity = 88/223 (39.46%), Postives = 137/223 (61.43%), Query Frame = -3
Query:  151 SAVYAQMSTLFVEQGMVMDTSI-GSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQN-VSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXLGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQK 813
            S + AQ+ TLF++QG  +D  +  +F+IPPASL  F   S++  + IYD++ V   RK TG  RG + LQRMGIG+ L +L M  A++ E  RL++A E  L  Q  V +P+SIF  +PQY L+G A+    I +LEFFYDQ+P++M+            +G ++SS +L+ V+  T   G+ GWI +NLN+  LD ++   A L++ N +L++V  + Y+ +
Sbjct:  343 SMMLAQIMTLFIKQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIGMILHILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIEIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGR-GWIQNNLNESRLDNYYMFFAVLNLLNFILFLVVIRFYEYR 564          
BLAST of CV712169 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.447e-36
Identity = 79/225 (35.11%), Postives = 121/225 (53.78%), Query Frame = -3
Query:  160 VFSAVYAQMSTLFVEQGMVMDTSIG----SFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQ-NVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXLGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 819
            +  ++    S+  + Q   MD  +     SF +P  S   F +I++  WV +YD+ ++P+A K  G+    S   RMG+GLF+S L M+ +A+VE  R + A      +  N  V IS  W +PQY L G AE  T IGQ EFFY + P +M             + + L+S +L  V   T+  GK  W+ DN+NKGH +Y++W+LA +S  N++ YV+C+  Y
Sbjct:  342 IMMSINTSQSSFQLLQATSMDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLGLFMSFLAMAISAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAEALTAIGQTEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHYNYYYWVLAIMSFINVIYYVICSWSY 566          
BLAST of CV712169 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.680e-36
Identity = 84/225 (37.33%), Postives = 128/225 (56.89%), Query Frame = -3
Query:  148 IVFSAVYAQMSTLFVEQGMVMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXLGNYLSSFILTVVTYFTTAGGKTGWIPDNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKK 822
            I+F  V+AQ++TL V Q   +D SIGSF IPPAS++ F V  ++    +YD++ + + +K      G   LQR+G+GLF   + M+ AA+VE+ RLR A       +  ++P+  +  IPQY ++G  E   + GQL+FF  + P  M+            LG + SS ++T+V  FT  G    WI D+LNKG L  F+WL+A L   N L+++V +K Y  K+
Sbjct:  350 ILFWTVHAQLTTLSVAQSETLDRSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMAMAVAALVELKRLRTAHAHGPTVK--TLPLGFYLLIPQYLIVGIGEALIYTGQLDFFLRECPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFT--GKAHPWIADDLNKGRLYNFYWLVAVLVALNFLIFLVFSKWYVYKE 570          
BLAST of CV712169 vs. ExPASy Swiss-Prot
Match: S15A4_RAT (Solute carrier family 15 member 4 OS=Rattus norvegicus GN=Slc15a4 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.502e-23
Identity = 70/245 (28.57%), Postives = 126/245 (51.43%), Query Frame = -3
Query:  145 IVFSAVYAQMSTLFVEQGM------VMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGF--SELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNV------SVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXLGNYLSSFILTVVTYFTTAGGKTGWIPD-----NLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 822
            I +  VY QM T +V Q +      +   +    T+P A L+ FD + ++  +P+ DK++ P+ R+      G   S L+R+ +G+F       AA ++E  RL L +E + ++Q +      +  + I+WQIPQY L+G +E+   I  LEF Y  +P +M+            +G+++ S +L +V+         GW+       N+N  HL Y+F+LLA +    +LL+++ + KY +++A
Sbjct:  328 IPYWTVYFQMQTTYVLQSLHLKIPEISSITTTHHTLPAAWLTMFDAVLILLLIPLKDKLVDPVLRR-----HGLLPSSLKRIAVGMFFVTCSAFAAGILESKRLDLVKE-KTINQTIGGVVYHAADLPIWWQIPQYVLIGISEIFASIAGLEFAYSAAPKSMQSAIMGLFFFFSGIGSFVGSGLLALVSL-----KAIGWMSSHTDFGNINSCHLHYYFFLLAAIQGATLLLFLIVSVKYDRQRA 561          
BLAST of CV712169 vs. ExPASy Swiss-Prot
Match: S15A4_MOUSE (Solute carrier family 15 member 4 OS=Mus musculus GN=Slc15a4 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.347e-23
Identity = 69/245 (28.16%), Postives = 126/245 (51.43%), Query Frame = -3
Query:  145 IVFSAVYAQMSTLFVEQGM------VMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGF--SELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNV------SVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXLGNYLSSFILTVVTYFTTAGGKTGWIPD-----NLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 822
            I +  VY QM T +  Q +      +   +    T+P A L+ FD + ++  +P+ DK++ P+ R+      G   S L+R+ +G+F  +    AA ++E  RL L +E + ++Q +      +  + I+WQIPQY L+G +E+   I  LEF Y  +P +M+            +G+++ S +L +V+         GW+       N+N  HL Y+F+LLA +    +LL+++ + KY +++A
Sbjct:  330 IPYWTVYFQMQTTYALQSLHLKIPEISSITTTHHTLPAAWLTMFDAVLILLLIPLKDKLVDPVLRR-----HGLLPSSLKRIAVGMFFVMCSAFAAGILESKRLDLVKE-KTINQTIGGVVYHAADLPIWWQIPQYVLIGISEIFASIAGLEFAYSAAPKSMQSAIMGLFFFFSGIGSFVGSGLLALVSL-----KAIGWMSSHTDFGNINSCHLHYYFFLLAAIQGATLLLFLIVSVKYDRQRA 563          
BLAST of CV712169 vs. ExPASy Swiss-Prot
Match: S15A4_HUMAN (Solute carrier family 15 member 4 OS=Homo sapiens GN=SLC15A4 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.709e-23
Identity = 68/240 (28.33%), Postives = 126/240 (52.50%), Query Frame = -3
Query:  160 IVFSAVYAQMSTLFVEQGM------VMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGF--SELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNV------SVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXLGNYLSSFILTVVTYFTTAGGKTGWIPD-----NLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKY 822
            I +  VY QM T +V Q +      + + +    T+P A L+ FD + ++  +P+ DK++ PI R+      G   S L+R+ +G+F  +    AA ++E  RL L +E + ++Q +      +  +S++WQ+PQY L+G +E+   I  LEF Y  +P +M+            +G+++ S +L +V+         GW+       N+N  +L+Y+F+LLA +    +LL+++ + KY
Sbjct:  329 IPYWTVYFQMQTTYVLQSLHLRIPEISNITTTPHTLPAAWLTMFDAVLILLLIPLKDKLVDPILRR-----HGLLPSSLKRIAVGMFFVMCSAFAAGILESKRLNLVKE-KTINQTIGNVVYHAADLSLWWQVPQYLLIGISEIFASIAGLEFAYSAAPKSMQSAIMGLFFFFSGVGSFVGSGLLALVSI-----KAIGWMSSHTDFGNINGCYLNYYFFLLAAIQGATLLLFLIISVKY 557          
The following BLAST results are available for this feature:
BLAST of CV712169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PTR2_ARATH2.781e-8667.84Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR5_ARATH9.603e-7156.83Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
PTR1_ARATH1.062e-6958.33Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR3A_ARATH2.016e-4442.73Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
PTR3B_ARATH6.713e-4039.46Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
PTR2X_ARATH3.447e-3635.11Probable peptide transporter At1g52190 OS=Arabidop... [more]
CHL1_ARATH7.680e-3637.33Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
S15A4_RAT1.502e-2328.57Solute carrier family 15 member 4 OS=Rattus norveg... [more]
S15A4_MOUSE3.347e-2328.16Solute carrier family 15 member 4 OS=Mus musculus ... [more]
S15A4_HUMAN5.709e-2328.33Solute carrier family 15 member 4 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A08_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712169 ID=CV712169; Name=CV712169; organism=Citrus sinensis; type=EST; length=827bp
TTTTTATTAAGAAATAAATTCATATTATTTTACAAACATTGTTCTTGGAA
CTTTAAGGAGATTTGGTGGCTGTGAAGCTGCAGATTTTATGTACAAAACC
ATTTGGAGAAGTGGCTACTGCGTCTTCTTGTAATAAAATTAACCGGCCTT
CTTCTGCTTGTACTTTTTGGCACAGACAACATACAACAACATATTAAAAA
TGCTGAGTCCAGCTAGAAGCCAGAAAAAATAATCAAGATGACCCTTATTC
AAGTTATCTGGAATCCATCCAGTTTTCCCTCCAGCAGTTGTGAAATAAGT
TACCACTGTCAGAATGAAAGAACTAAGGTAATTGCCTAACGCTGTCGTCA
GAAGAGATAACGCACTGCACAAGCTCCGCATCGCATCTGGAGATTGGTCA
TAGAAGAACTCAAGCTGTCCAATGAATGTACATACTTCTGCCGCACCCAA
CAAGAAATACTGTGGTATTTGCCAAAAGATGCTAATTGGCACAGAAACAT
TTTGGTCAACAAGCTCAAGCTCTCTTGCAAGACGCAATCTATTGATCTCA
ACCACAGCAGCAGCAGACATGCAGAGAACTGACAGAAAGAGGCCAATTCC
CATTCGCTGCAACTCTGAGAAACCCCTCTCCTTGCCTGTGAACTTCCTTG
CTATTGGGACAATGATCTTATCATATATAGGTACCCAGAAAATAACACTG
ATAACATCAAAACTTGAGAGAGAGGCAGGAGGAATGGTGAAAGAACCAAT
AGACGTGTCCATCACCATCCCTTGTTCCACAAACAATGTAGACATTTGGG
CATATACAGCAGAAAAGACAATTCCAG
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